dbBact

This is the development server

Experiment ID: 998

Field	Description
name	mechanical biofilm disruption causes microbial and immunological shifts in periodontitis patients
sra	prjna725103
doi	https://doi.org/10.1038/s41598-021-89002-z
datamd5	928f456d453663ce93fd6603c3f015af
mapmd5	ca7d09c7959873419c4cf635d8300281

Annotations for experiment:

term enrichment score

Term	Score
glasgow	0.500000
LOWER IN non-surgical periodontal therapy	0.333333
non-surgical periodontal therapy	0.333333
before therapy	0.285714
LOWER IN before therapy	0.285714
subgingival dental plaque	0.181818
periodontitis	0.117647
united kingdom	0.117647
subgingival plaque	0.100000
adult	0.008264
homo sapiens	0.005277

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN non-surgical periodontal therapy	0.500000
non-surgical periodontal therapy	0.500000
glasgow	0.333333
before therapy	0.333333
LOWER IN before therapy	0.333333
subgingival dental plaque	0.100000
periodontitis	0.062500
united kingdom	0.062500
subgingival plaque	0.052632
adult	0.004149
homo sapiens	0.002646

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
adult	1.000000
glasgow	1.000000
subgingival plaque	1.000000
subgingival dental plaque	1.000000
periodontitis	1.000000
united kingdom	1.000000
before therapy	0.250000
LOWER IN non-surgical periodontal therapy	0.250000
non-surgical periodontal therapy	0.250000
LOWER IN before therapy	0.250000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
adult	1.000000
glasgow	1.000000
subgingival plaque	1.000000
subgingival dental plaque	1.000000
periodontitis	1.000000
united kingdom	1.000000
before therapy	1.000000
LOWER IN non-surgical periodontal therapy	1.000000
non-surgical periodontal therapy	1.000000
LOWER IN before therapy	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
998	amnon	high in non-surgical periodontal therapy compared to before therapy in homo sapiens adult glasgow subgingival plaque subgingival dental plaque periodontitis united kingdom	2022-12-30	v3	1 / 9	approved	No
998	amnon	dominant homo sapiens, adult, glasgow, subgingival plaque, subgingival dental plaque, periodontitis, united kingdom	2022-12-30	v3	1 / 20	approved	No
998	amnon	high in before therapy compared to non-surgical periodontal therapy in homo sapiens adult glasgow subgingival plaque subgingival dental plaque periodontitis united kingdom	2022-12-30	v3	1 / 85	approved	No
998	amnon	common homo sapiens, adult, glasgow, subgingival plaque, subgingival dental plaque, periodontitis, united kingdom	2022-12-30	v3	1 / 95	approved	No

Problems / suggestions? Please visit the dbBact forum