Experiment ID: 963

Field Description
namegrowth promotion and antibiotic induced metabolic shifts in the chicken gut microbiome
doihttps://doi.org/10.1038/s42003-022-03239-6
sraprjna751585
datamd58dd477c333da6b86182667425db51a28
mapmd550ea68857a2e84a6437f2934a4420567

Annotations for experiment:

term enrichment score
TermScore
state of indiana0.500000
age 5 weeks0.229508
LOWER IN age 3 weeks0.153846
age 3 weeks0.133333
age 1 week0.133333
LOWER IN avilamycin0.133333
LOWER IN virginiamycin0.133333
avilamycin0.133333
virginiamycin0.133333
broiler chicken0.111111
LOWER IN age 5 weeks0.105263
LOWER IN age 1 week0.095238
male organism0.058824
chicken0.047619
gallus gallus0.045455
caecum0.020000
research facility0.005236
LOWER IN control0.004494
control0.004396
united states of america0.003333
Fraction of dbbact annotations with this term covered by the query
TermScore
state of indiana0.333333
LOWER IN avilamycin0.333333
LOWER IN virginiamycin0.333333
avilamycin0.333333
virginiamycin0.333333
age 5 weeks0.142857
LOWER IN age 3 weeks0.142857
LOWER IN age 5 weeks0.142857
age 3 weeks0.111111
LOWER IN age 1 week0.111111
age 1 week0.090909
broiler chicken0.058824
male organism0.030303
chicken0.024390
gallus gallus0.023256
caecum0.010101
research facility0.002625
LOWER IN control0.002278
control0.002227
united states of america0.001669
Fraction of annotations for the query sequences containing the term
TermScore
state of indiana1.000000
united states of america1.000000
broiler chicken1.000000
male organism1.000000
research facility1.000000
caecum1.000000
gallus gallus1.000000
chicken1.000000
age 5 weeks0.583333
age 1 week0.250000
age 3 weeks0.166667
LOWER IN age 3 weeks0.166667
control0.166667
LOWER IN control0.166667
LOWER IN age 1 week0.083333
LOWER IN age 5 weeks0.083333
LOWER IN avilamycin0.083333
LOWER IN virginiamycin0.083333
avilamycin0.083333
virginiamycin0.083333
Number of experiments associating the term to the sequence
TermScore
state of indiana1.000000
united states of america1.000000
broiler chicken1.000000
male organism1.000000
research facility1.000000
caecum1.000000
gallus gallus1.000000
chicken1.000000
age 3 weeks1.000000
LOWER IN age 1 week1.000000
age 5 weeks1.000000
LOWER IN age 3 weeks1.000000
age 1 week1.000000
LOWER IN age 5 weeks1.000000
control1.000000
LOWER IN avilamycin1.000000
LOWER IN virginiamycin1.000000
avilamycin1.000000
LOWER IN control1.000000
virginiamycin1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
963amnon high in virginiamycin compared to control in age 5 weeks state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-21v41 / 2approvedNo
963amnon high in avilamycin compared to control in age 5 weeks state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-21v41 / 5approvedNo
963amnon high in control compared to virginiamycin in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana age 5 weeks 2022-12-21v41 / 7approvedNo
963amnondominant age 1 week, state of indiana, united states of america, broiler chicken, male organism, research facility, caecum, gallus gallus, chicken2022-12-20v41 / 19approvedNo
963amnondominant age 5 weeks, state of indiana, united states of america, broiler chicken, male organism, research facility, caecum, gallus gallus, chicken2022-12-21v41 / 19approvedNo
963amnon high in control compared to avilamycin in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana age 5 weeks 2022-12-21v41 / 23approvedNo
963amnon high in age 1 week compared to age 3 weeks in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana 2022-12-20v41 / 36approvedNo
963amnon high in age 3 weeks compared to age 5 weeks in chicken gallus gallus caecum research facility male organism broiler chicken united states of america state of indiana 2022-12-20v41 / 58approvedNo
963amnoncommon chicken, gallus gallus, caecum, research facility, male organism, broiler chicken, united states of america, state of indiana, age 1 week2022-12-20v41 / 74approvedNo
963amnon high in age 5 weeks compared to age 3 weeks in state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-20v41 / 109approvedNo
963amnoncommon chicken, gallus gallus, caecum, research facility, male organism, broiler chicken, united states of america, state of indiana, age 5 weeks2022-12-21v41 / 171approvedNo
963amnon high in age 3 weeks compared to age 1 week in state of indiana united states of america broiler chicken male organism research facility caecum gallus gallus chicken 2022-12-20v41 / 196approvedNo

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