Experiment ID: 960

Field Description
namedynamics of the infant gut microbiota in the first 18 months of life: the impact of maternal hiv infection and breastfeeding
doihttps://doi.org/10.1186/s40168-022-01230-1
sraprjna706727
datamd5e7452048f31b6c4d03bae752b10ce8d2
mapmd512c6c3c79e24e4c1c302ad9bbae94747

Annotations for experiment:

term enrichment score
TermScore
edo state0.500000
15-month-old human stage0.235294
9-month-old human stage0.190476
nigeria0.166667
18-month-old human stage0.160000
LOWER IN 9-month-old human stage0.142857
meconium0.142857
LOWER IN 18-month-old human stage0.125000
newborn human stage0.125000
1-month-old human stage0.089552
LOWER IN 1-month-old human stage0.060606
vagina0.047619
LOWER IN infant0.040816
oral cavity0.040000
LOWER IN adult0.028169
infant0.026920
LOWER IN female0.025316
female0.012240
adult0.004054
homo sapiens0.002591
feces0.002293
Fraction of dbbact annotations with this term covered by the query
TermScore
edo state0.333333
LOWER IN 9-month-old human stage0.333333
15-month-old human stage0.333333
meconium0.333333
LOWER IN 18-month-old human stage0.200000
9-month-old human stage0.200000
newborn human stage0.200000
18-month-old human stage0.142857
nigeria0.090909
LOWER IN 1-month-old human stage0.090909
1-month-old human stage0.066667
LOWER IN infant0.037037
vagina0.032258
oral cavity0.025641
LOWER IN adult0.020408
LOWER IN female0.017544
infant0.013699
female0.006289
adult0.002045
homo sapiens0.001297
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
nigeria1.000000
edo state1.000000
feces0.818182
infant0.772727
adult0.227273
female0.227273
18-month-old human stage0.181818
9-month-old human stage0.181818
15-month-old human stage0.181818
1-month-old human stage0.136364
LOWER IN 18-month-old human stage0.090909
LOWER IN 9-month-old human stage0.090909
oral cavity0.090909
vagina0.090909
meconium0.090909
newborn human stage0.090909
LOWER IN infant0.045455
LOWER IN 1-month-old human stage0.045455
LOWER IN adult0.045455
LOWER IN female0.045455
Number of experiments associating the term to the sequence
TermScore
homo sapiens1.000000
nigeria1.000000
edo state1.000000
feces1.000000
adult1.000000
female1.000000
LOWER IN infant1.000000
LOWER IN 18-month-old human stage1.000000
infant1.000000
18-month-old human stage1.000000
LOWER IN 9-month-old human stage1.000000
9-month-old human stage1.000000
LOWER IN 1-month-old human stage1.000000
LOWER IN adult1.000000
LOWER IN female1.000000
1-month-old human stage1.000000
15-month-old human stage1.000000
oral cavity1.000000
vagina1.000000
meconium1.000000
newborn human stage1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
960amnoncommon homo sapiens, vagina, nigeria, female, adult, edo state2022-12-20v41 / 7approvedNo
960amnoncommon homo sapiens, nigeria, edo state, feces, infant, newborn human stage, meconium2022-12-20v41 / 8approvedNo
960amnoncommon homo sapiens, nigeria, edo state, infant, feces, 1-month-old human stage2022-12-20v41 / 8approvedNo
960amnondominant meconium, newborn human stage, infant, feces, edo state, nigeria, homo sapiens2022-12-20v41 / 14approvedNo
960amnondominant edo state, adult, female, nigeria, vagina, homo sapiens2022-12-20v41 / 15approvedNo
960amnondominant 1-month-old human stage, feces, infant, edo state, nigeria, homo sapiens2022-12-20v41 / 15approvedNo
960amnondominant adult, female, feces, edo state, nigeria, homo sapiens2022-12-20v41 / 17approvedNo
960amnondominant oral cavity, 15-month-old human stage, infant, edo state, nigeria, homo sapiens2022-12-20v41 / 17approvedNo
960amnondominant 9-month-old human stage, feces, infant, edo state, nigeria, homo sapiens2022-12-20v41 / 22approvedNo
960amnondominant 15-month-old human stage, feces, infant, edo state, nigeria, homo sapiens2022-12-20v41 / 22approvedNo
960amnoncommon homo sapiens, nigeria, edo state, infant, feces, 9-month-old human stage2022-12-20v41 / 24approvedNo
960amnondominant 18-month-old human stage, feces, infant, edo state, nigeria, homo sapiens2022-12-20v41 / 24approvedNo
960amnoncommon homo sapiens, nigeria, edo state, infant, feces, 15-month-old human stage2022-12-20v41 / 30approvedNo
960amnoncommon homo sapiens, nigeria, edo state, infant, 15-month-old human stage, oral cavity2022-12-20v41 / 36approvedNo
960amnon high in 1-month-old human stage compared to 9-month-old human stage in homo sapiens nigeria edo state infant feces 2022-12-20v41 / 37approvedNo
960amnoncommon homo sapiens, nigeria, edo state, infant, feces, 18-month-old human stage2022-12-20v41 / 50approvedNo
960amnon high in 9-month-old human stage compared to 18-month-old human stage in homo sapiens nigeria edo state infant feces 2022-12-20v41 / 74approvedNo
960amnoncommon homo sapiens, nigeria, edo state, feces, female, adult2022-12-20v41 / 109approvedNo
960amnon high in infant 18-month-old human stage compared to adult female in feces edo state nigeria homo sapiens 2022-12-20v41 / 178approvedNo
960amnon high in 9-month-old human stage compared to 1-month-old human stage in feces infant edo state nigeria homo sapiens 2022-12-20v41 / 244approvedNo
960amnon high in 18-month-old human stage compared to 9-month-old human stage in feces infant edo state nigeria homo sapiens 2022-12-20v41 / 407approvedNo
960amnon high in adult female compared to infant 18-month-old human stage in homo sapiens nigeria edo state feces 2022-12-20v41 / 1392approvedNo

Problems / suggestions? Please visit the dbBact forum