Experiment ID: 954

Field Description
nameiron deficient diets modify the gut microbiome and reduce the severity of enteric infection in a mouse model of s. typhimurium-induced enterocolitis
sraprjna743278
doihttps://doi.org/10.1016/j.jnutbio.2022.109065
datamd5fc8a0319d34dafa52b82de84577d29fa
mapmd5bae2dca50bab789100b4879e065a27ee

Annotations for experiment:

term enrichment score
TermScore
streptomycin0.400000
salmonella infections0.333333
iron supplemented diet0.285714
iron deficient diet0.285714
LOWER IN iron deficient diet0.200000
LOWER IN iron supplemented diet0.200000
LOWER IN 0.181818
iron atom0.142857
LOWER IN salmonella infections0.142857
state of florida0.100000
female organism0.100000
antibiotic0.090909
c57bl/60.080000
caecum0.039216
mouse0.029851
mus musculus0.027027
research facility0.010471
LOWER IN control0.008772
control0.008584
united states of america0.006689
Fraction of dbbact annotations with this term covered by the query
TermScore
iron atom0.500000
salmonella infections0.500000
LOWER IN salmonella infections0.500000
streptomycin0.333333
iron supplemented diet0.250000
iron deficient diet0.250000
LOWER IN iron deficient diet0.250000
LOWER IN iron supplemented diet0.250000
LOWER IN 0.200000
state of florida0.052632
female organism0.052632
antibiotic0.050000
c57bl/60.041667
caecum0.020000
mouse0.015152
mus musculus0.013699
research facility0.005263
LOWER IN control0.004630
control0.004525
united states of america0.003356
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
research facility1.000000
caecum1.000000
mus musculus1.000000
c57bl/61.000000
state of florida1.000000
mouse1.000000
female organism1.000000
antibiotic0.500000
streptomycin0.500000
iron supplemented diet0.333333
iron deficient diet0.333333
salmonella infections0.250000
LOWER IN iron deficient diet0.166667
LOWER IN 0.166667
LOWER IN iron supplemented diet0.166667
iron atom0.083333
LOWER IN control0.083333
control0.083333
LOWER IN salmonella infections0.083333
Number of experiments associating the term to the sequence
TermScore
iron supplemented diet1.000000
united states of america1.000000
research facility1.000000
caecum1.000000
mus musculus1.000000
c57bl/61.000000
state of florida1.000000
mouse1.000000
female organism1.000000
iron deficient diet1.000000
iron atom1.000000
LOWER IN iron deficient diet1.000000
antibiotic1.000000
streptomycin1.000000
salmonella infections1.000000
LOWER IN 1.000000
LOWER IN iron supplemented diet1.000000
LOWER IN control1.000000
control1.000000
LOWER IN salmonella infections1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
954amnonhigher in iron deficient diet in mice treated with antibiotics and salmonella ( high in iron deficient diet compared to iron supplemented diet in united states of america research facility caecum antibiotic mus musculus c57bl/6 state of florida mouse streptomycin female organism salmonella infections )2022-12-15v41 / 3approvedNo
954amnon high in salmonella infections compared to control in united states of america research facility caecum antibiotic mus musculus c57bl/6 state of florida mouse streptomycin female organism 2022-12-15v41 / 5approvedNo
954amnon high in control compared to salmonella infections in united states of america research facility caecum antibiotic mus musculus c57bl/6 state of florida mouse streptomycin female organism 2022-12-15v41 / 5approvedNo
954amnondominant united states of america, research facility, caecum, antibiotic, mus musculus, c57bl/6, state of florida, mouse, streptomycin, female organism2022-12-15v41 / 13approvedNo
954amnondominant united states of america, research facility, caecum, mus musculus, c57bl/6, state of florida, mouse, female organism, iron deficient diet2022-12-15v41 / 14approvedNo
954amnonhigher in mice fed iron defience diet ( high in iron deficient diet compared to iron supplemented diet in united states of america research facility caecum mus musculus c57bl/6 state of florida mouse female organism )2022-12-15v41 / 15approvedNo
954amnondominant united states of america, research facility, caecum, mus musculus, c57bl/6, state of florida, mouse, female organism, iron supplemented diet2022-12-15v41 / 15approvedNo
954amnoncommon united states of america, research facility, caecum, antibiotic, mus musculus, c57bl/6, state of florida, mouse, streptomycin, female organism2022-12-15v41 / 19approvedNo
954amnonlower in iron deficient diet in mice treated with antibiotics and salmonella ( high in iron supplemented diet compared to iron deficient diet in united states of america research facility caecum antibiotic mus musculus c57bl/6 state of florida mouse streptomycin female organism salmonella infections )2022-12-15v41 / 20approvedNo
954amnonlower in mice fed iron defience diet ( high in iron atom iron supplemented diet compared to iron deficient diet in united states of america research facility caecum mus musculus c57bl/6 state of florida mouse female organism )2022-12-15v41 / 29approvedNo
954amnoncommon united states of america, research facility, caecum, mus musculus, c57bl/6, state of florida, mouse, female organism, iron deficient diet2022-12-15v41 / 77approvedNo
954amnoncommon , iron supplemented diet, united states of america, research facility, caecum, mus musculus, c57bl/6, state of florida, mouse, female organism2022-12-15v41 / 120approvedNo

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