dbBact

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Experiment ID: 906

Field	Description
name	shades of grey: host phenotype dependent effect of urbanization on the bacterial microbiome of a wild mammal
sra	prjna701759?
doi	https://doi.org/10.1186/s42523-021-00105-4
datamd5	2a115bbd68d00398e33ce7c50e7e7484
mapmd5	3947149434bd207a7be5b679d5c64310

Annotations for experiment:

term enrichment score

Term	Score
grey squirrel	0.500000
sciurus carolinensis	0.333333
LOWER IN forested area	0.222222
province of ontario	0.166667
forested area	0.133333
LOWER IN male organism	0.117647
LOWER IN female organism	0.086957
LOWER IN city	0.080000
male organism	0.051282
female organism	0.046512
city	0.037736
canada	0.028571
feces	0.002294

Fraction of dbbact annotations with this term covered by the query

Term	Score
grey squirrel	0.333333
LOWER IN forested area	0.333333
sciurus carolinensis	0.200000
forested area	0.111111
province of ontario	0.090909
LOWER IN male organism	0.090909
LOWER IN female organism	0.058824
LOWER IN city	0.052632
male organism	0.030303
female organism	0.027027
city	0.021277
canada	0.014493
feces	0.001148

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
canada	1.000000
province of ontario	1.000000
sciurus carolinensis	1.000000
grey squirrel	1.000000
city	0.166667
LOWER IN forested area	0.166667
forested area	0.166667
LOWER IN city	0.166667
female organism	0.166667
LOWER IN male organism	0.166667
male organism	0.166667
LOWER IN female organism	0.166667

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
canada	1.000000
province of ontario	1.000000
sciurus carolinensis	1.000000
grey squirrel	1.000000
city	1.000000
LOWER IN forested area	1.000000
forested area	1.000000
LOWER IN city	1.000000
female organism	1.000000
LOWER IN male organism	1.000000
male organism	1.000000
LOWER IN female organism	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
906	amnon	high in male organism compared to female organism in feces canada province of ontario sciurus carolinensis grey squirrel	2022-05-19	v4	1 / 8	approved	No
906	amnon	dominant feces, canada, province of ontario, sciurus carolinensis, grey squirrel	2022-05-19	v4	1 / 9	approved	No
906	amnon	high in female organism compared to male organism in feces canada province of ontario sciurus carolinensis grey squirrel	2022-05-19	v4	1 / 12	approved	No
906	amnon	common canada, province of ontario, grey squirrel, sciurus carolinensis, feces	2022-05-19	v4	1 / 165	approved	No
906	amnon	high in forested area compared to city in feces canada province of ontario sciurus carolinensis grey squirrel	2022-05-19	v4	1 / 416	approved	No
906	amnon	high in city compared to forested area in feces canada province of ontario sciurus carolinensis grey squirrel	2022-05-19	v4	1 / 421	approved	No

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