dbBact

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Experiment ID: 891

Field	Description
name	persistent gut microbiota immaturity in malnourished bangladeshi children
sra	prjeb5482
doi	https://doi.org/10.1038/nature13421
datamd5	fa9e9733a3b8e4dbc352694b2f1693d0
mapmd5	ad4d1e5601630f559532b7b1e7fa19bf

Annotations for experiment:

term enrichment score

Term	Score
dhaka	0.500000
urban slum	0.500000
bangladesh	0.333333
infant stage	0.333333
LOWER IN under-1-year-old human stage	0.080000
under-1-year-old human stage	0.080000
LOWER IN 1-year-old human stage	0.068966
1-year-old human stage	0.064516
infant	0.027027
homo sapiens	0.002591
feces	0.002294

Fraction of dbbact annotations with this term covered by the query

Term	Score
dhaka	0.333333
urban slum	0.333333
bangladesh	0.200000
infant stage	0.200000
LOWER IN under-1-year-old human stage	0.052632
under-1-year-old human stage	0.043478
LOWER IN 1-year-old human stage	0.043478
1-year-old human stage	0.034483
infant	0.013699
homo sapiens	0.001297
feces	0.001148

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
infant	1.000000
bangladesh	1.000000
dhaka	1.000000
infant stage	1.000000
urban slum	1.000000
1-year-old human stage	0.500000
under-1-year-old human stage	0.500000
LOWER IN under-1-year-old human stage	0.166667
LOWER IN 1-year-old human stage	0.166667

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
infant	1.000000
bangladesh	1.000000
dhaka	1.000000
infant stage	1.000000
urban slum	1.000000
1-year-old human stage	1.000000
LOWER IN under-1-year-old human stage	1.000000
under-1-year-old human stage	1.000000
LOWER IN 1-year-old human stage	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
891	amnon	dominant feces, homo sapiens, infant, bangladesh, dhaka, infant stage, under-1-year-old human stage, urban slum	2022-04-03	v4	1 / 7	approved	No
891	amnon	common feces, homo sapiens, infant, bangladesh, dhaka, infant stage, urban slum, under-1-year-old human stage	2022-04-03	v4	1 / 8	approved	No
891	amnon	dominant feces, homo sapiens, infant, bangladesh, dhaka, infant stage, 1-year-old human stage, urban slum	2022-04-03	v4	1 / 14	approved	No
891	amnon	common feces, homo sapiens, infant, bangladesh, dhaka, infant stage, urban slum, 1-year-old human stage	2022-04-03	v4	1 / 25	approved	No
891	amnon	high in under-1-year-old human stage compared to 1-year-old human stage in bangladesh dhaka feces homo sapiens urban slum infant stage infant	2022-04-03	v4	1 / 42	approved	No
891	amnon	high in 1-year-old human stage compared to under-1-year-old human stage in feces homo sapiens infant bangladesh dhaka infant stage urban slum	2022-04-03	v4	1 / 363	approved	No

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