dbBact

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Experiment ID: 83

Field	Description
name	illumina miseq phylogenetic amplicon sequencing shows a large reduction of an uncharacterised succinivibrionaceae and an increase of the methanobrevibacter gottschalkii clade in feed restricted cattle
sra	srp060573
datamd5	7676226aed130ef7e756d8fc9fa30199
mapmd5	dda6182df57ade04db6279634d15777e

Annotations for experiment:

term enrichment score

Term	Score
holstein-friesian bull	0.500000
LOWER IN normal feed	0.181818
LOWER IN restricted diet	0.181818
660 days	0.181818
LOWER IN 605 days	0.181818
605 days	0.181818
LOWER IN 660 days	0.181818
rumen solids	0.181818
LOWER IN rumen liquid	0.181818
LOWER IN rumen solids	0.181818
restricted feed	0.133333
ireland	0.111111
rumen liquid	0.105263
normal diet	0.095238
bos taurus	0.052632
age	0.044444
diet	0.039216
rumen	0.037037
LOWER IN control	0.004474
control	0.004376

Fraction of dbbact annotations with this term covered by the query

Term	Score
holstein-friesian bull	0.333333
LOWER IN normal feed	0.333333
LOWER IN restricted diet	0.333333
660 days	0.333333
LOWER IN 605 days	0.333333
605 days	0.333333
LOWER IN 660 days	0.333333
rumen solids	0.333333
LOWER IN rumen liquid	0.333333
LOWER IN rumen solids	0.333333
restricted feed	0.142857
rumen liquid	0.090909
normal diet	0.076923
ireland	0.058824
bos taurus	0.027027
age	0.024390
diet	0.021277
rumen	0.018868
LOWER IN control	0.002278
control	0.002227

Fraction of annotations for the query sequences containing the term

Term	Score
bos taurus	1.000000
rumen	1.000000
holstein-friesian bull	1.000000
ireland	1.000000
diet	0.250000
age	0.250000
restricted feed	0.125000
LOWER IN control	0.125000
LOWER IN normal feed	0.125000
control	0.125000
LOWER IN restricted diet	0.125000
normal diet	0.125000
660 days	0.125000
LOWER IN 605 days	0.125000
605 days	0.125000
LOWER IN 660 days	0.125000
rumen solids	0.125000
LOWER IN rumen liquid	0.125000
rumen liquid	0.125000
LOWER IN rumen solids	0.125000

Number of experiments associating the term to the sequence

Term	Score
bos taurus	1.000000
rumen	1.000000
holstein-friesian bull	1.000000
ireland	1.000000
restricted feed	1.000000
diet	1.000000
LOWER IN control	1.000000
LOWER IN normal feed	1.000000
control	1.000000
LOWER IN restricted diet	1.000000
normal diet	1.000000
age	1.000000
660 days	1.000000
LOWER IN 605 days	1.000000
605 days	1.000000
LOWER IN 660 days	1.000000
rumen solids	1.000000
LOWER IN rumen liquid	1.000000
rumen liquid	1.000000
LOWER IN rumen solids	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
83	amnon	dominant bos taurus, rumen, holstein-friesian bull, ireland	2017-03-05	v4	1 / 16	approved	No
83	amnon	higher in rumen liquids compared to solids in normal diet cows ( high in rumen liquid compared to rumen solids in bos taurus rumen holstein-friesian bull ireland )	2017-03-05	v4	1 / 40	approved	No
83	amnon	higher in rumen solids compared to liquid in normal diet cows ( high in rumen solids compared to rumen liquid in bos taurus rumen holstein-friesian bull ireland )	2017-03-05	v4	1 / 67	approved	No
83	amnon	higher in earlier timepoint (yonger age) in cow rumen normal diet ( high in 605 days age compared to 660 days in bos taurus rumen holstein-friesian bull ireland )	2017-03-05	v4	1 / 80	approved	No
83	amnon	higher in later timepoint (older age) in cow rumen normal diet ( high in age 660 days compared to 605 days in bos taurus rumen holstein-friesian bull ireland )	2017-03-05	v4	1 / 248	approved	No
83	amnon	common bos taurus, rumen, holstein-friesian bull, ireland	2017-03-05	v4	1 / 757	approved	No
83	amnon	high in diet control normal diet compared to restricted diet in bos taurus rumen holstein-friesian bull ireland	2017-03-05	v4	1 / 1023	approved	No
83	amnon	high in restricted feed diet compared to control normal feed in bos taurus rumen holstein-friesian bull ireland	2017-03-05	v4	1 / 1735	approved	No

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