dbBact

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Experiment ID: 83

Field	Description
name	illumina miseq phylogenetic amplicon sequencing shows a large reduction of an uncharacterised succinivibrionaceae and an increase of the methanobrevibacter gottschalkii clade in feed restricted cattle
sra	srp060573
datamd5	7676226aed130ef7e756d8fc9fa30199
mapmd5	dda6182df57ade04db6279634d15777e

Annotations for experiment:

term enrichment score

Term	Score
holstein-friesian bull	0.666667
LOWER IN normal feed	0.200000
LOWER IN restricted diet	0.200000
660 days	0.200000
LOWER IN 605 days	0.200000
605 days	0.200000
LOWER IN 660 days	0.200000
rumen solids	0.200000
LOWER IN rumen liquid	0.200000
LOWER IN rumen solids	0.200000
ireland	0.200000
restricted feed	0.166667
rumen liquid	0.142857
normal diet	0.133333
bos taurus	0.100000
age	0.080000
diet	0.071429
rumen	0.071429
LOWER IN control	0.008772
control	0.008584

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN normal feed	0.500000
holstein-friesian bull	0.500000
LOWER IN restricted diet	0.500000
660 days	0.500000
LOWER IN 605 days	0.500000
605 days	0.500000
LOWER IN 660 days	0.500000
rumen solids	0.500000
LOWER IN rumen liquid	0.500000
LOWER IN rumen solids	0.500000
restricted feed	0.250000
rumen liquid	0.166667
normal diet	0.142857
ireland	0.111111
bos taurus	0.052632
age	0.047619
diet	0.041667
rumen	0.037037
LOWER IN control	0.004545
control	0.004444

Fraction of annotations for the query sequences containing the term

Term	Score
rumen	1.000000
bos taurus	1.000000
ireland	1.000000
holstein-friesian bull	1.000000
diet	0.250000
age	0.250000
restricted feed	0.125000
LOWER IN control	0.125000
LOWER IN normal feed	0.125000
control	0.125000
normal diet	0.125000
LOWER IN restricted diet	0.125000
660 days	0.125000
LOWER IN 605 days	0.125000
605 days	0.125000
LOWER IN 660 days	0.125000
rumen solids	0.125000
LOWER IN rumen liquid	0.125000
rumen liquid	0.125000
LOWER IN rumen solids	0.125000

Number of experiments associating the term to the sequence

Term	Score
diet	1.000000
restricted feed	1.000000
LOWER IN control	1.000000
LOWER IN normal feed	1.000000
rumen	1.000000
bos taurus	1.000000
ireland	1.000000
holstein-friesian bull	1.000000
control	1.000000
normal diet	1.000000
LOWER IN restricted diet	1.000000
age	1.000000
660 days	1.000000
LOWER IN 605 days	1.000000
605 days	1.000000
LOWER IN 660 days	1.000000
rumen solids	1.000000
LOWER IN rumen liquid	1.000000
rumen liquid	1.000000
LOWER IN rumen solids	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
83	amnon	dominant rumen, bos taurus, ireland, holstein-friesian bull	2017-03-05	v4	1 / 16	approved	No
83	amnon	higher in rumen liquids compared to solids in normal diet cows ( high in rumen liquid compared to rumen solids in rumen bos taurus ireland holstein-friesian bull )	2017-03-05	v4	1 / 40	approved	No
83	amnon	higher in rumen solids compared to liquid in normal diet cows ( high in rumen solids compared to rumen liquid in rumen bos taurus ireland holstein-friesian bull )	2017-03-05	v4	1 / 67	approved	No
83	amnon	higher in earlier timepoint (yonger age) in cow rumen normal diet ( high in age 605 days compared to 660 days in rumen bos taurus ireland holstein-friesian bull )	2017-03-05	v4	1 / 80	approved	No
83	amnon	higher in later timepoint (older age) in cow rumen normal diet ( high in age 660 days compared to 605 days in rumen bos taurus ireland holstein-friesian bull )	2017-03-05	v4	1 / 248	approved	No
83	amnon	common rumen, bos taurus, ireland, holstein-friesian bull	2017-03-05	v4	1 / 757	approved	No
83	amnon	high in control diet normal diet compared to restricted diet in rumen bos taurus ireland holstein-friesian bull	2017-03-05	v4	1 / 1023	approved	No
83	amnon	high in diet restricted feed compared to control normal feed in rumen bos taurus ireland holstein-friesian bull	2017-03-05	v4	1 / 1735	approved	No

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