dbBact

Field	Description
name	randomized controlled trial on the impact of early-life intervention with bifidobacteria on the healthy infant fecal microbiota and metabolome
sra	prjeb21196
doi	https://doi.org/10.3945/ajcn.117.157529
datamd5	2535150e2fc6961f0e02cdd668e2b8ef
mapmd5	ac78dc4dc3e4e57e2f0a779876ba9abc

term enrichment score

Term	Score
breast fed	0.322581
formula fed	0.292683
age 7 months	0.270270
3-month-old human stage	0.187500
12-month-old human stage	0.155172
LOWER IN age 7 months	0.153846
1-month-old human stage	0.148148
LOWER IN formula fed	0.133333
LOWER IN breast fed	0.125000
LOWER IN 3-month-old human stage	0.117647
2-year-old human stage	0.106383
LOWER IN 12-month-old human stage	0.096774
germany	0.076923
LOWER IN 1-month-old human stage	0.071429
infant	0.052455
LOWER IN bifidobacterium supplement	0.043478
bifidobacterium supplement	0.043478
LOWER IN 2-year-old human stage	0.038462
LOWER IN infant	0.034483
LOWER IN child	0.033898
control diet	0.032787
LOWER IN control diet	0.032787
child	0.029070
homo sapiens	0.005277
feces	0.004608

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN age 7 months	0.500000
LOWER IN bifidobacterium supplement	0.500000
bifidobacterium supplement	0.500000
age 7 months	0.333333
breast fed	0.250000
LOWER IN formula fed	0.250000
formula fed	0.200000
LOWER IN breast fed	0.200000
LOWER IN 12-month-old human stage	0.166667
LOWER IN 3-month-old human stage	0.166667
LOWER IN 1-month-old human stage	0.166667
3-month-old human stage	0.142857
12-month-old human stage	0.125000
1-month-old human stage	0.125000
LOWER IN 2-year-old human stage	0.125000
2-year-old human stage	0.100000
LOWER IN infant	0.071429
LOWER IN child	0.066667
control diet	0.058824
LOWER IN control diet	0.058824
germany	0.040000
infant	0.027027
child	0.016667
homo sapiens	0.002646
feces	0.002309

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
germany	1.000000
infant	0.886364
formula fed	0.545455
breast fed	0.454545
3-month-old human stage	0.272727
age 7 months	0.227273
12-month-old human stage	0.204545
1-month-old human stage	0.181818
child	0.113636
2-year-old human stage	0.113636
LOWER IN age 7 months	0.090909
LOWER IN breast fed	0.090909
LOWER IN 3-month-old human stage	0.090909
LOWER IN formula fed	0.090909
LOWER IN 12-month-old human stage	0.068182
LOWER IN 1-month-old human stage	0.045455
LOWER IN infant	0.022727
LOWER IN child	0.022727
LOWER IN 2-year-old human stage	0.022727
control diet	0.022727
LOWER IN bifidobacterium supplement	0.022727
bifidobacterium supplement	0.022727
LOWER IN control diet	0.022727

Number of experiments associating the term to the sequence

Term	Score
child	1.000000
2-year-old human stage	1.000000
LOWER IN infant	1.000000
LOWER IN 12-month-old human stage	1.000000
feces	1.000000
homo sapiens	1.000000
germany	1.000000
formula fed	1.000000
12-month-old human stage	1.000000
LOWER IN age 7 months	1.000000
infant	1.000000
LOWER IN breast fed	1.000000
3-month-old human stage	1.000000
1-month-old human stage	1.000000
LOWER IN child	1.000000
LOWER IN 2-year-old human stage	1.000000
breast fed	1.000000
age 7 months	1.000000
LOWER IN 3-month-old human stage	1.000000
LOWER IN 1-month-old human stage	1.000000
LOWER IN formula fed	1.000000
control diet	1.000000
LOWER IN bifidobacterium supplement	1.000000
bifidobacterium supplement	1.000000
LOWER IN control diet	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
797	amnon	high in bifidobacterium supplement compared to control diet in feces homo sapiens infant germany formula fed 3-month-old human stage	2021-06-13	v3	1 / 3	approved	No
797	amnon	high in age 7 months compared to 12-month-old human stage in feces homo sapiens infant germany breast fed	2021-06-13	v3	1 / 4	approved	No
797	amnon	high in control diet compared to bifidobacterium supplement in feces homo sapiens infant germany formula fed 3-month-old human stage	2021-06-13	v3	1 / 5	approved	No
797	amnon	common feces, homo sapiens, infant, germany, breast fed, 1-month-old human stage	2021-06-13	v3	1 / 9	approved	No
797	amnon	high in formula fed compared to breast fed in feces homo sapiens infant germany 12-month-old human stage	2021-06-13	v3	1 / 10	approved	No
797	amnon	high in breast fed compared to formula fed in feces homo sapiens infant germany 12-month-old human stage	2021-06-13	v3	1 / 12	approved	No
797	amnon	common feces, homo sapiens, infant, germany, breast fed, age 7 months	2021-06-13	v3	1 / 12	approved	No
797	amnon	high in breast fed compared to formula fed in feces homo sapiens infant germany 3-month-old human stage	2021-06-13	v3	1 / 13	approved	No
797	amnon	high in breast fed compared to formula fed in feces homo sapiens infant germany 1-month-old human stage	2021-06-13	v3	1 / 14	approved	No
797	amnon	high in 1-month-old human stage compared to 3-month-old human stage in feces homo sapiens infant germany breast fed	2021-06-13	v3	1 / 14	approved	No
797	amnon	dominant feces, homo sapiens, infant, germany, breast fed, age 7 months	2021-06-13	v3	1 / 14	approved	No
797	amnon	high in 3-month-old human stage compared to age 7 months in feces homo sapiens infant germany breast fed	2021-06-13	v3	1 / 15	approved	No
797	amnon	high in 12-month-old human stage compared to age 7 months in feces homo sapiens infant germany breast fed	2021-06-13	v3	1 / 15	approved	No
797	amnon	common feces, homo sapiens, infant, germany, breast fed, 3-month-old human stage	2021-06-13	v3	1 / 15	approved	No
797	amnon	dominant feces, homo sapiens, infant, germany, breast fed, 3-month-old human stage	2021-06-13	v3	1 / 15	approved	No
797	amnon	common feces, homo sapiens, infant, germany, formula fed, 1-month-old human stage	2021-06-13	v3	1 / 15	approved	No
797	amnon	high in breast fed compared to formula fed in feces homo sapiens infant germany age 7 months	2021-06-13	v3	1 / 17	approved	No
797	amnon	common feces, homo sapiens, infant, germany, formula fed, 3-month-old human stage	2021-06-13	v3	1 / 17	approved	No
797	amnon	dominant feces, homo sapiens, infant, germany, breast fed, 12-month-old human stage	2021-06-13	v3	1 / 18	approved	No
797	amnon	dominant feces, homo sapiens, child, germany, breast fed, 2-year-old human stage	2021-06-13	v3	1 / 19	approved	No
797	amnon	dominant feces, homo sapiens, infant, germany, formula fed, 1-month-old human stage	2021-06-13	v3	1 / 19	approved	No
797	amnon	dominant feces, homo sapiens, infant, germany, formula fed, 3-month-old human stage	2021-06-13	v3	1 / 20	approved	No
797	amnon	common feces, homo sapiens, infant, germany, breast fed, 12-month-old human stage	2021-06-13	v3	1 / 20	approved	No
797	amnon	dominant feces, homo sapiens, infant, germany, formula fed, age 7 months	2021-06-13	v3	1 / 20	approved	No
797	amnon	dominant feces, homo sapiens, infant, germany, breast fed, 1-month-old human stage	2021-06-13	v3	1 / 20	approved	No
797	amnon	high in 1-month-old human stage compared to 3-month-old human stage in feces homo sapiens infant germany formula fed	2021-06-13	v3	1 / 22	approved	No
797	amnon	dominant feces, homo sapiens, child, germany, formula fed, 2-year-old human stage	2021-06-13	v3	1 / 22	approved	No
797	amnon	common feces, homo sapiens, infant, germany, formula fed, 12-month-old human stage	2021-06-13	v3	1 / 23	approved	No
797	amnon	common feces, homo sapiens, infant, germany, formula fed, age 7 months	2021-06-13	v3	1 / 23	approved	No
797	amnon	dominant feces, homo sapiens, infant, germany, formula fed, 12-month-old human stage	2021-06-13	v3	1 / 25	approved	No
797	amnon	high in 3-month-old human stage compared to 1-month-old human stage in feces homo sapiens infant germany breast fed	2021-06-13	v3	1 / 27	approved	No
797	amnon	high in age 7 months compared to 3-month-old human stage in feces homo sapiens infant germany breast fed	2021-06-13	v3	1 / 28	approved	No
797	amnon	high in 3-month-old human stage compared to age 7 months in feces homo sapiens infant germany formula fed	2021-06-13	v3	1 / 29	approved	No
797	amnon	high in formula fed compared to breast fed in feces homo sapiens infant germany age 7 months	2021-06-13	v3	1 / 31	approved	No
797	amnon	high in 3-month-old human stage compared to 1-month-old human stage in feces homo sapiens infant germany formula fed	2021-06-13	v3	1 / 39	approved	No
797	amnon	high in age 7 months compared to 3-month-old human stage in feces homo sapiens infant germany formula fed	2021-06-13	v3	1 / 44	approved	No
797	amnon	high in age 7 months compared to 12-month-old human stage in feces homo sapiens infant germany formula fed	2021-06-13	v3	1 / 44	approved	No
797	amnon	common feces, homo sapiens, child, germany, formula fed, 2-year-old human stage	2021-06-13	v3	1 / 46	approved	No
797	amnon	common feces, homo sapiens, child, germany, breast fed, 2-year-old human stage	2021-06-13	v3	1 / 50	approved	No
797	amnon	high in infant 12-month-old human stage compared to child 2-year-old human stage in feces homo sapiens germany formula fed	2021-06-13	v3	1 / 52	approved	No
797	amnon	high in formula fed compared to breast fed in feces homo sapiens infant germany 1-month-old human stage	2021-06-13	v3	1 / 69	approved	No
797	amnon	high in formula fed compared to breast fed in feces homo sapiens infant germany 3-month-old human stage	2021-06-13	v3	1 / 75	approved	No
797	amnon	high in 12-month-old human stage compared to age 7 months in feces homo sapiens infant germany formula fed	2021-06-13	v3	1 / 106	approved	No
797	amnon	high in child 2-year-old human stage compared to infant 12-month-old human stage in feces homo sapiens germany formula fed	2021-06-13	v3	1 / 139	approved	No

This is the development server

Experiment ID: 797

Annotations for experiment: