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Experiment ID: 776

Field	Description
name	cecal microbiome profile of hawaiian feral chickens and pasture-raised broiler (commercial) chickens determined using 16s rrna amplicon sequencing
sra	prjna644775
doi	https://doi.org/10.1016/j.psj.2021.101181
datamd5	2eae5b7b9cc2589ea6c8d0c3353a65cd
mapmd5	c5f30b069ec422fbce7e0b0eca0ea8ab

Annotations for experiment:

term enrichment score

Term	Score
age 15-20 weeks	0.400000
feral	0.400000
age 5 weeks	0.222222
LOWER IN age 15-20 weeks	0.222222
LOWER IN feral	0.222222
hawaii	0.200000
LOWER IN broiler chicken	0.153846
LOWER IN age 5 weeks	0.153846
broiler chicken	0.105263
LOWER IN research facility	0.105263
LOWER IN captive	0.095238
LOWER IN wild	0.057143
chicken	0.047619
gallus gallus	0.045455
captive	0.030769
wild	0.026667
caecum	0.020000
research facility	0.005222

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN age 15-20 weeks	0.333333
LOWER IN feral	0.333333
age 15-20 weeks	0.333333
feral	0.333333
age 5 weeks	0.142857
LOWER IN broiler chicken	0.142857
LOWER IN age 5 weeks	0.142857
hawaii	0.111111
LOWER IN research facility	0.076923
LOWER IN captive	0.066667
broiler chicken	0.058824
LOWER IN wild	0.034483
chicken	0.024390
gallus gallus	0.023256
captive	0.015873
wild	0.013699
caecum	0.010101
research facility	0.002625

Fraction of annotations for the query sequences containing the term

Term	Score
hawaii	1.000000
chicken	1.000000
gallus gallus	1.000000
caecum	1.000000
age 5 weeks	0.500000
captive	0.500000
research facility	0.500000
broiler chicken	0.500000
age 15-20 weeks	0.500000
feral	0.500000
wild	0.500000
LOWER IN age 15-20 weeks	0.166667
LOWER IN feral	0.166667
LOWER IN wild	0.166667
LOWER IN captive	0.166667
LOWER IN broiler chicken	0.166667
LOWER IN research facility	0.166667
LOWER IN age 5 weeks	0.166667

Number of experiments associating the term to the sequence

Term	Score
hawaii	1.000000
chicken	1.000000
gallus gallus	1.000000
age 5 weeks	1.000000
captive	1.000000
research facility	1.000000
broiler chicken	1.000000
caecum	1.000000
LOWER IN age 15-20 weeks	1.000000
LOWER IN feral	1.000000
LOWER IN wild	1.000000
age 15-20 weeks	1.000000
feral	1.000000
wild	1.000000
LOWER IN captive	1.000000
LOWER IN broiler chicken	1.000000
LOWER IN research facility	1.000000
LOWER IN age 5 weeks	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
776	amnon	dominant hawaii, chicken, gallus gallus, age 5 weeks, captive, research facility, broiler chicken, caecum	2021-04-25	v3	1 / 17	approved	No
776	amnon	dominant hawaii, chicken, gallus gallus, age 15-20 weeks, feral, caecum, wild	2021-04-25	v3	1 / 26	approved	No
776	amnon	high in age 15-20 weeks feral wild compared to captive broiler chicken research facility age 5 weeks in gallus gallus chicken hawaii caecum	2021-04-25	v3	1 / 107	approved	No
776	amnon	common hawaii, chicken, gallus gallus, age 15-20 weeks, feral, caecum, wild	2021-04-25	v3	1 / 191	approved	No
776	amnon	high in age 5 weeks research facility captive broiler chicken compared to age 15-20 weeks feral wild in hawaii chicken gallus gallus caecum	2021-04-25	v3	1 / 252	approved	No
776	amnon	common hawaii, chicken, gallus gallus, age 5 weeks, captive, research facility, broiler chicken, caecum	2021-04-25	v3	1 / 343	approved	No

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