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Experiment ID: 748

Field	Description
name	influence of industry standard feeding frequencies on behavioral patterns and rumen and fecal bacterial communities in holstein and jersey cows
sra	srp271418
doi	https://doi.org/10.1371/journal.pone.0248147
datamd5	ae81c4ca7fa2ef62610ba3fecaeb035b
mapmd5	9bf26f537941bf0091bfbd52986eed9a

Annotations for experiment:

term enrichment score

Term	Score
state of mississippi	0.666667
jersey cow	0.461538
holstein dairy cow	0.315789
LOWER IN jersey cow	0.222222
LOWER IN holstein dairy cow	0.222222
ruminal fluid	0.166667
cow	0.153846
LOWER IN ruminal fluid	0.117647
bos taurus	0.100000
female organism	0.100000
LOWER IN rumen	0.095238
rumen	0.068966
LOWER IN feces	0.045455
research facility	0.010417
united states of america	0.006689
feces	0.004577

Fraction of dbbact annotations with this term covered by the query

Term	Score
state of mississippi	0.500000
LOWER IN jersey cow	0.500000
jersey cow	0.500000
LOWER IN holstein dairy cow	0.500000
LOWER IN ruminal fluid	0.333333
holstein dairy cow	0.250000
LOWER IN rumen	0.142857
ruminal fluid	0.100000
cow	0.083333
bos taurus	0.052632
female organism	0.052632
rumen	0.037037
LOWER IN feces	0.033333
research facility	0.005236
united states of america	0.003356
feces	0.002299

Fraction of annotations for the query sequences containing the term

Term	Score
united states of america	1.000000
research facility	1.000000
bos taurus	1.000000
cow	1.000000
female organism	1.000000
state of mississippi	1.000000
rumen	0.500000
ruminal fluid	0.500000
feces	0.500000
holstein dairy cow	0.428571
jersey cow	0.428571
LOWER IN jersey cow	0.142857
LOWER IN holstein dairy cow	0.142857
LOWER IN feces	0.071429
LOWER IN rumen	0.071429
LOWER IN ruminal fluid	0.071429

Number of experiments associating the term to the sequence

Term	Score
rumen	1.000000
ruminal fluid	1.000000
LOWER IN feces	1.000000
united states of america	1.000000
research facility	1.000000
bos taurus	1.000000
cow	1.000000
female organism	1.000000
state of mississippi	1.000000
feces	1.000000
LOWER IN rumen	1.000000
LOWER IN ruminal fluid	1.000000
holstein dairy cow	1.000000
LOWER IN jersey cow	1.000000
jersey cow	1.000000
LOWER IN holstein dairy cow	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
748	amnon	dominant feces, united states of america, research facility, bos taurus, cow, female organism, state of mississippi, jersey cow	2021-03-10	v4	1 / 13	approved	No
748	amnon	dominant feces, united states of america, research facility, bos taurus, cow, female organism, state of mississippi, holstein dairy cow	2021-03-10	v4	1 / 13	approved	No
748	amnon	dominant united states of america, research facility, rumen, bos taurus, cow, female organism, ruminal fluid, state of mississippi, jersey cow	2021-03-10	v4	1 / 14	approved	No
748	amnon	dominant united states of america, research facility, rumen, bos taurus, cow, female organism, ruminal fluid, state of mississippi, holstein dairy cow	2021-03-10	v4	1 / 16	approved	No
748	amnon	high in jersey cow compared to holstein dairy cow in feces united states of america research facility bos taurus cow female organism state of mississippi	2021-03-10	v4	1 / 308	approved	No
748	amnon	high in holstein dairy cow compared to jersey cow in feces united states of america research facility bos taurus cow female organism state of mississippi	2021-03-10	v4	1 / 407	approved	No
748	amnon	common feces, united states of america, research facility, bos taurus, cow, female organism, state of mississippi, jersey cow	2021-03-10	v4	1 / 516	approved	No
748	amnon	common feces, united states of america, research facility, bos taurus, cow, female organism, state of mississippi, holstein dairy cow	2021-03-10	v4	1 / 577	approved	No
748	amnon	high in jersey cow compared to holstein dairy cow in united states of america research facility rumen bos taurus cow female organism ruminal fluid state of mississippi	2021-03-10	v4	1 / 603	approved	No
748	amnon	common united states of america, research facility, rumen, bos taurus, cow, female organism, ruminal fluid, state of mississippi, holstein dairy cow	2021-03-10	v4	1 / 614	approved	No
748	amnon	common united states of america, research facility, rumen, bos taurus, cow, female organism, ruminal fluid, state of mississippi, jersey cow	2021-03-10	v4	1 / 632	approved	No
748	amnon	high in holstein dairy cow compared to jersey cow in united states of america research facility rumen bos taurus cow female organism ruminal fluid state of mississippi	2021-03-10	v4	1 / 638	approved	No
748	amnon	high in feces compared to rumen ruminal fluid in united states of america research facility bos taurus cow female organism state of mississippi	2021-03-10	v4	1 / 2467	approved	No
748	amnon	high in rumen ruminal fluid compared to feces in united states of america research facility bos taurus cow female organism state of mississippi	2021-03-10	v4	1 / 2716	approved	No

Showing 1 to 14 of 14 entries

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