Experiment ID: 722

Field Description
name16s rrna amplicon sequencing of urban prokaryotic communities in the south bronx river estuary
sraprjna606795
doihttps://doi.org/10.1128/mra.00182-20
datamd5e4827c69b0a3b57eb9c7bd47f04b9ecc
mapmd5b4531c48c050b3be43ae01c165158eb8

Annotations for experiment:

term enrichment score
TermScore
hunts point0.315789
soundview0.315789
oyster reef0.315789
estuary0.250000
sediment surface0.237288
LOWER IN oyster reef0.153846
LOWER IN soundview0.153846
LOWER IN hunts point0.153846
new york city0.142857
LOWER IN sediment surface0.133333
LOWER IN surface water0.105263
LOWER IN sediment0.086957
LOWER IN marine sediment0.086957
state of new york0.071429
surface water0.055046
LOWER IN sea water0.054054
marine sediment0.052045
sediment0.033097
sea water0.022642
united states of america0.003333
Fraction of dbbact annotations with this term covered by the query
TermScore
hunts point0.333333
soundview0.333333
oyster reef0.333333
LOWER IN oyster reef0.333333
LOWER IN soundview0.333333
LOWER IN hunts point0.333333
LOWER IN sediment surface0.200000
sediment surface0.142857
estuary0.142857
LOWER IN surface water0.111111
new york city0.076923
LOWER IN sediment0.076923
LOWER IN marine sediment0.076923
LOWER IN sea water0.037037
state of new york0.037037
surface water0.030303
marine sediment0.027027
sediment0.016949
sea water0.011765
united states of america0.001669
Fraction of annotations for the query sequences containing the term
TermScore
new york city1.000000
state of new york1.000000
united states of america1.000000
estuary1.000000
sediment surface0.700000
marine sediment0.700000
sediment0.700000
hunts point0.300000
soundview0.300000
oyster reef0.300000
sea water0.300000
surface water0.300000
LOWER IN surface water0.100000
LOWER IN sea water0.100000
LOWER IN oyster reef0.100000
LOWER IN soundview0.100000
LOWER IN hunts point0.100000
LOWER IN sediment0.100000
LOWER IN marine sediment0.100000
LOWER IN sediment surface0.100000
Number of experiments associating the term to the sequence
TermScore
LOWER IN surface water1.000000
LOWER IN sea water1.000000
sediment surface1.000000
marine sediment1.000000
sediment1.000000
new york city1.000000
state of new york1.000000
united states of america1.000000
estuary1.000000
hunts point1.000000
soundview1.000000
oyster reef1.000000
LOWER IN oyster reef1.000000
LOWER IN soundview1.000000
LOWER IN hunts point1.000000
sea water1.000000
surface water1.000000
LOWER IN sediment1.000000
LOWER IN marine sediment1.000000
LOWER IN sediment surface1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
722amnondominant hunts point, sediment surface, new york city, state of new york, united states of america, sediment, marine sediment, estuary2021-01-02v41 / 8approvedNo
722amnondominant soundview, oyster reef, sediment surface, new york city, state of new york, united states of america, sediment, marine sediment, estuary2021-01-02v41 / 8approvedNo
722amnondominant surface water, sea water, new york city, state of new york, united states of america, estuary2021-01-02v41 / 20approvedNo
722amnoncommon surface water, sea water, new york city, state of new york, united states of america, estuary2021-01-02v41 / 301approvedNo
722amnon high in sea water surface water compared to sediment marine sediment sediment surface in united states of america state of new york new york city estuary 2021-01-02v41 / 399approvedNo
722amnon high in oyster reef soundview compared to hunts point in sediment surface new york city state of new york united states of america sediment marine sediment estuary 2021-01-02v41 / 469approvedNo
722amnon high in hunts point compared to oyster reef soundview in sediment surface new york city state of new york united states of america sediment marine sediment estuary 2021-01-02v41 / 696approvedNo
722amnoncommon soundview, oyster reef, sediment surface, new york city, state of new york, united states of america, sediment, marine sediment, estuary2021-01-02v41 / 922approvedNo
722amnoncommon hunts point, sediment surface, new york city, state of new york, united states of america, sediment, marine sediment, estuary2021-01-02v41 / 1001approvedNo
722amnon high in sediment surface marine sediment sediment compared to surface water sea water in new york city state of new york united states of america estuary 2021-01-02v41 / 1736approvedNo

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