dbBact

This is the development server

Experiment ID: 715

Field	Description
name	signatures within the esophageal microbiome are associated with host genetics, age, and disease
doi	https://doi.org/10.1186/s40168-018-0611-4
sra	prjeb25236
datamd5	e7a2a6fdcab854266429b030c2c22ea9
mapmd5	b11ca8c81bce31e4f7f7f8f4fab3d337

Annotations for experiment:

term enrichment score

Term	Score
oesophageal brush	0.615385
esophagus	0.380952
LOWER IN third decade human stage	0.250000
LOWER IN 65-79 year-old human stage	0.222222
65-79 year-old human stage	0.222222
LOWER IN fourth decade human stage	0.200000
contaminant	0.181818
third decade human stage	0.166667
fourth decade human stage	0.153846
australia	0.062500
adult	0.008256
homo sapiens	0.005274

Fraction of dbbact annotations with this term covered by the query

Term	Score
oesophageal brush	0.500000
LOWER IN third decade human stage	0.333333
esophagus	0.250000
LOWER IN 65-79 year-old human stage	0.250000
65-79 year-old human stage	0.250000
LOWER IN fourth decade human stage	0.200000
contaminant	0.166667
third decade human stage	0.142857
fourth decade human stage	0.125000
australia	0.032258
adult	0.004149
homo sapiens	0.002646

Fraction of annotations for the query sequences containing the term

Term	Score
australia	1.000000
homo sapiens	0.800000
esophagus	0.800000
adult	0.800000
oesophageal brush	0.800000
third decade human stage	0.200000
fourth decade human stage	0.200000
LOWER IN 65-79 year-old human stage	0.200000
65-79 year-old human stage	0.200000
LOWER IN third decade human stage	0.200000
LOWER IN fourth decade human stage	0.200000
contaminant	0.200000
contamination	0.200000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
esophagus	1.000000
adult	1.000000
australia	1.000000
oesophageal brush	1.000000
third decade human stage	1.000000
fourth decade human stage	1.000000
LOWER IN 65-79 year-old human stage	1.000000
65-79 year-old human stage	1.000000
LOWER IN third decade human stage	1.000000
LOWER IN fourth decade human stage	1.000000
contaminant	1.000000
contamination	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
715	amnon	high in 65-79 year-old human stage compared to third decade human stage fourth decade human stage in homo sapiens esophagus adult australia oesophageal brush	2028-05-22	v4	1 / 4	approved	No
715	amnon	higher in blank compared to esophagus samples (contamination)	2028-05-22	v4	1 / 4	approved	No
715	amnon	dominant homo sapiens, esophagus, adult, australia, oesophageal brush	2028-05-22	v4	1 / 18	approved	No
715	amnon	high in third decade human stage fourth decade human stage compared to 65-79 year-old human stage in homo sapiens esophagus adult australia oesophageal brush	2028-05-22	v4	1 / 22	approved	No
715	amnon	common homo sapiens, esophagus, adult, australia, oesophageal brush	2028-05-22	v4	1 / 92	approved	No

Problems / suggestions? Please visit the dbBact forum