dbBact

This is the development server

Experiment ID: 715

Field	Description
name	signatures within the esophageal microbiome are associated with host genetics, age, and disease
doi	https://doi.org/10.1186/s40168-018-0611-4
sra	prjeb25236
datamd5	e7a2a6fdcab854266429b030c2c22ea9
mapmd5	b11ca8c81bce31e4f7f7f8f4fab3d337

Annotations for experiment:

term enrichment score

Term	Score
oesophageal brush	0.470588
esophagus	0.242424
LOWER IN third decade human stage	0.200000
LOWER IN 65-79 year-old human stage	0.166667
65-79 year-old human stage	0.166667
LOWER IN fourth decade human stage	0.142857
contaminant	0.125000
third decade human stage	0.111111
fourth decade human stage	0.100000
australia	0.032258
adult	0.004080
homo sapiens	0.002590

Fraction of dbbact annotations with this term covered by the query

Term	Score
oesophageal brush	0.333333
LOWER IN third decade human stage	0.200000
esophagus	0.142857
LOWER IN 65-79 year-old human stage	0.142857
65-79 year-old human stage	0.142857
LOWER IN fourth decade human stage	0.111111
contaminant	0.090909
third decade human stage	0.076923
fourth decade human stage	0.066667
australia	0.016393
adult	0.002045
homo sapiens	0.001297

Fraction of annotations for the query sequences containing the term

Term	Score
australia	1.000000
homo sapiens	0.800000
adult	0.800000
esophagus	0.800000
oesophageal brush	0.800000
fourth decade human stage	0.200000
LOWER IN 65-79 year-old human stage	0.200000
third decade human stage	0.200000
LOWER IN fourth decade human stage	0.200000
65-79 year-old human stage	0.200000
LOWER IN third decade human stage	0.200000
contaminant	0.200000
contamination	0.200000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
adult	1.000000
australia	1.000000
esophagus	1.000000
oesophageal brush	1.000000
fourth decade human stage	1.000000
LOWER IN 65-79 year-old human stage	1.000000
third decade human stage	1.000000
LOWER IN fourth decade human stage	1.000000
65-79 year-old human stage	1.000000
LOWER IN third decade human stage	1.000000
contaminant	1.000000
contamination	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
715	amnon	high in 65-79 year-old human stage compared to fourth decade human stage third decade human stage in homo sapiens adult australia esophagus oesophageal brush	2028-05-22	v4	1 / 4	approved	No
715	amnon	higher in blank compared to esophagus samples (contamination)	2028-05-22	v4	1 / 4	approved	No
715	amnon	dominant homo sapiens, adult, australia, esophagus, oesophageal brush	2028-05-22	v4	1 / 18	approved	No
715	amnon	high in fourth decade human stage third decade human stage compared to 65-79 year-old human stage in homo sapiens adult australia esophagus oesophageal brush	2028-05-22	v4	1 / 22	approved	No
715	amnon	common homo sapiens, adult, australia, esophagus, oesophageal brush	2028-05-22	v4	1 / 92	approved	No

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