Experiment ID: 710

Field Description
namea quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities
sraprjna575097
doihttps://doi.org/10.1038/s41467-020-16224-6
datamd5d0517eabd64c1970834fc8c8a5fe442e
mapmd5a8529cc86fa78ca87dbeb78570d6af66

Annotations for experiment:

term enrichment score
TermScore
swiss webster0.326531
ketogenic diet0.166667
LOWER IN ketogenic diet0.111111
LOWER IN small intestine0.100000
contaminant0.100000
small intestine0.100000
LOWER IN stomach0.071429
mouse chow0.062500
control diet0.055556
LOWER IN mouse chow0.047619
LOWER IN control diet0.047619
stomach0.047619
state of california0.030303
LOWER IN feces0.029412
mouse0.015137
mus musculus0.013687
research facility0.005234
united states of america0.003333
feces0.002288
Fraction of dbbact annotations with this term covered by the query
TermScore
swiss webster0.200000
ketogenic diet0.111111
LOWER IN ketogenic diet0.111111
LOWER IN small intestine0.090909
contaminant0.090909
small intestine0.090909
LOWER IN stomach0.052632
mouse chow0.034483
control diet0.030303
LOWER IN mouse chow0.030303
LOWER IN control diet0.030303
stomach0.030303
LOWER IN feces0.016949
state of california0.015385
mouse0.007634
mus musculus0.006897
research facility0.002625
united states of america0.001669
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
state of california1.000000
mouse0.888889
mus musculus0.888889
research facility0.888889
swiss webster0.888889
feces0.333333
control diet0.333333
mouse chow0.333333
ketogenic diet0.333333
LOWER IN stomach0.111111
LOWER IN small intestine0.111111
LOWER IN mouse chow0.111111
LOWER IN control diet0.111111
LOWER IN ketogenic diet0.111111
contaminant0.111111
contamination0.111111
stomach0.111111
small intestine0.111111
LOWER IN feces0.111111
Number of experiments associating the term to the sequence
TermScore
mouse1.000000
mus musculus1.000000
united states of america1.000000
research facility1.000000
swiss webster1.000000
state of california1.000000
feces1.000000
LOWER IN stomach1.000000
LOWER IN small intestine1.000000
control diet1.000000
mouse chow1.000000
ketogenic diet1.000000
LOWER IN mouse chow1.000000
LOWER IN control diet1.000000
LOWER IN ketogenic diet1.000000
contaminant1.000000
contamination1.000000
stomach1.000000
small intestine1.000000
LOWER IN feces1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
710amnon high in stomach small intestine compared to feces in mouse mus musculus united states of america research facility swiss webster state of california 2028-05-20v41 / 4approvedNo
710amnondominant mouse, mus musculus, united states of america, research facility, swiss webster, state of california, control diet, mouse chow2028-05-20v41 / 13approvedNo
710amnondominant mouse, mus musculus, united states of america, research facility, swiss webster, state of california, ketogenic diet2028-05-20v41 / 16approvedNo
710amnonsuspected contaminant (common in blanks) (contamination)2028-05-20v41 / 28approvedNo
710amnon high in mouse chow control diet compared to ketogenic diet in mouse mus musculus feces research facility swiss webster united states of america state of california 2028-05-20v41 / 49approvedNo
710amnon high in ketogenic diet compared to mouse chow control diet in mouse mus musculus feces research facility swiss webster united states of america state of california 2028-05-20v41 / 107approvedNo
710amnoncommon mouse, mus musculus, united states of america, research facility, swiss webster, state of california, ketogenic diet2028-05-20v41 / 141approvedNo
710amnoncommon mouse, mus musculus, united states of america, research facility, swiss webster, state of california, control diet, mouse chow2028-05-20v41 / 151approvedNo
710amnon high in feces compared to stomach small intestine in mouse mus musculus united states of america research facility swiss webster state of california 2028-05-20v41 / 329approvedNo

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