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Experiment ID: 708

Field	Description
name	dynamic gut microbiome changes to low-iron challenge
sra	prjna562734
doi	doi:10.1128/aem.02307-20
datamd5	ee504e53b9bc719a06b7e7dde01582b2
mapmd5	95860d38937cdd735efd1f684cce5464

Annotations for experiment:

term enrichment score

Term	Score
state of montana	0.500000
iron	0.333333
LOWER IN low iron	0.333333
low iron	0.333333
LOWER IN iron	0.333333
iron supplemented diet	0.250000
LOWER IN iron deficient diet	0.250000
iron deficient diet	0.250000
LOWER IN iron supplemented diet	0.250000
c57bl/6	0.080000
mouse	0.029851
mus musculus	0.027027
research facility	0.010417
united states of america	0.006689
feces	0.004587

Fraction of dbbact annotations with this term covered by the query

Term	Score
iron	0.500000
LOWER IN low iron	0.500000
low iron	0.500000
LOWER IN iron	0.500000
state of montana	0.333333
iron supplemented diet	0.250000
LOWER IN iron deficient diet	0.250000
iron deficient diet	0.250000
LOWER IN iron supplemented diet	0.250000
c57bl/6	0.041667
mouse	0.015152
mus musculus	0.013699
research facility	0.005236
united states of america	0.003356
feces	0.002299

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
united states of america	1.000000
research facility	1.000000
mus musculus	1.000000
c57bl/6	1.000000
mouse	1.000000
state of montana	1.000000
iron	0.250000
iron supplemented diet	0.250000
LOWER IN iron deficient diet	0.250000
LOWER IN low iron	0.250000
iron deficient diet	0.250000
low iron	0.250000
LOWER IN iron	0.250000
LOWER IN iron supplemented diet	0.250000

Number of experiments associating the term to the sequence

Term	Score
iron	1.000000
iron supplemented diet	1.000000
LOWER IN iron deficient diet	1.000000
LOWER IN low iron	1.000000
feces	1.000000
united states of america	1.000000
research facility	1.000000
mus musculus	1.000000
c57bl/6	1.000000
mouse	1.000000
state of montana	1.000000
iron deficient diet	1.000000
low iron	1.000000
LOWER IN iron	1.000000
LOWER IN iron supplemented diet	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
708	amnon	dominant feces, united states of america, research facility, mus musculus, c57bl/6, mouse, state of montana	2028-05-16	v4	1 / 15	approved	No
708	amnon	higher in mice with iron deficient diet ( high in iron deficient diet low iron compared to iron iron supplemented diet in feces united states of america research facility mus musculus c57bl/6 mouse state of montana )	2028-05-16	v4	1 / 47	approved	No
708	amnon	common feces, united states of america, research facility, mus musculus, c57bl/6, mouse, state of montana	2028-05-16	v4	1 / 232	approved	No
708	amnon	lower in mice with iron deficient diet ( high in iron iron supplemented diet compared to iron deficient diet low iron in feces united states of america research facility mus musculus c57bl/6 mouse state of montana )	2028-05-16	v4	1 / 295	approved	No

Showing 1 to 4 of 4 entries

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