dbBact

Field	Description
name	determination of microbiological characteristics in the digestive tract of different ruminant species
sra	prjna489133
doi	https://doi.org/10.1002/mbo3.769
datamd5	32e42f22fb4df26c636f9e89a9a6c62a
mapmd5	7c7faf9634598a3b4757d009c5239f0c

term enrichment score

Term	Score
shandong province	0.400000
chinese bohai black beef cattle	0.363636
chinese luxi yellow beef cattle	0.363636
chinese laoshan milk goat	0.300000
rumen liquid	0.285714
holstein dairy cow	0.266667
LOWER IN chinese bohai black beef cattle	0.222222
LOWER IN chinese luxi yellow beef cattle	0.222222
capra hircus	0.171429
goat	0.171429
LOWER IN capra hircus	0.125000
LOWER IN goat	0.125000
LOWER IN chinese laoshan milk goat	0.125000
low milk yield	0.125000
LOWER IN high milk yield	0.125000
high milk yield	0.125000
LOWER IN low milk yield	0.125000
LOWER IN bos taurus	0.111111
bos taurus	0.098655
rumen	0.071429
research facility	0.010417
china	0.009434

Fraction of dbbact annotations with this term covered by the query

Term	Score
chinese bohai black beef cattle	0.500000
chinese luxi yellow beef cattle	0.500000
LOWER IN capra hircus	0.500000
LOWER IN goat	0.500000
LOWER IN chinese laoshan milk goat	0.500000
chinese laoshan milk goat	0.500000
low milk yield	0.500000
LOWER IN high milk yield	0.500000
LOWER IN chinese bohai black beef cattle	0.500000
LOWER IN chinese luxi yellow beef cattle	0.500000
high milk yield	0.500000
LOWER IN low milk yield	0.500000
shandong province	0.250000
holstein dairy cow	0.250000
LOWER IN bos taurus	0.250000
rumen liquid	0.166667
capra hircus	0.142857
goat	0.142857
bos taurus	0.052632
rumen	0.037037
research facility	0.005236
china	0.004739

Fraction of annotations for the query sequences containing the term

Term	Score
research facility	1.000000
rumen	1.000000
rumen liquid	1.000000
shandong province	1.000000
china	1.000000
bos taurus	0.785714
chinese bohai black beef cattle	0.285714
chinese luxi yellow beef cattle	0.285714
holstein dairy cow	0.285714
capra hircus	0.214286
goat	0.214286
chinese laoshan milk goat	0.214286
LOWER IN chinese bohai black beef cattle	0.142857
LOWER IN chinese luxi yellow beef cattle	0.142857
LOWER IN capra hircus	0.071429
LOWER IN goat	0.071429
LOWER IN chinese laoshan milk goat	0.071429
low milk yield	0.071429
LOWER IN high milk yield	0.071429
LOWER IN bos taurus	0.071429
high milk yield	0.071429
LOWER IN low milk yield	0.071429

Number of experiments associating the term to the sequence

Term	Score
research facility	1.000000
rumen	1.000000
bos taurus	1.000000
rumen liquid	1.000000
shandong province	1.000000
china	1.000000
chinese bohai black beef cattle	1.000000
chinese luxi yellow beef cattle	1.000000
LOWER IN capra hircus	1.000000
LOWER IN goat	1.000000
LOWER IN chinese laoshan milk goat	1.000000
holstein dairy cow	1.000000
capra hircus	1.000000
goat	1.000000
chinese laoshan milk goat	1.000000
low milk yield	1.000000
LOWER IN high milk yield	1.000000
LOWER IN bos taurus	1.000000
LOWER IN chinese bohai black beef cattle	1.000000
LOWER IN chinese luxi yellow beef cattle	1.000000
high milk yield	1.000000
LOWER IN low milk yield	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
687	amnon	dominant research facility, rumen, bos taurus, rumen liquid, shandong province, china, chinese bohai black beef cattle	2028-03-09	v4	1 / 8	approved	No
687	amnon	dominant research facility, rumen, bos taurus, rumen liquid, shandong province, china, chinese luxi yellow beef cattle	2028-03-09	v4	1 / 9	approved	No
687	amnon	high in chinese bohai black beef cattle compared to chinese luxi yellow beef cattle in research facility rumen bos taurus rumen liquid shandong province china	2028-03-09	v4	1 / 10	approved	No
687	amnon	dominant research facility, rumen, bos taurus, rumen liquid, shandong province, china, holstein dairy cow	2028-03-09	v4	1 / 14	approved	No
687	amnon	dominant research facility, rumen, rumen liquid, capra hircus, shandong province, china, goat, chinese laoshan milk goat	2028-03-09	v4	1 / 15	approved	No
687	amnon	high in chinese luxi yellow beef cattle compared to chinese bohai black beef cattle in research facility rumen bos taurus rumen liquid shandong province china	2028-03-09	v4	1 / 34	approved	No
687	amnon	high in high milk yield compared to low milk yield in research facility rumen bos taurus rumen liquid shandong province china holstein dairy cow	2028-03-09	v4	1 / 40	approved	No
687	amnon	high in capra hircus goat chinese laoshan milk goat compared to bos taurus chinese bohai black beef cattle chinese luxi yellow beef cattle in research facility rumen rumen liquid shandong province china	2028-03-09	v4	1 / 318	approved	No
687	amnon	high in low milk yield compared to high milk yield in research facility rumen bos taurus rumen liquid shandong province china holstein dairy cow	2028-03-09	v4	1 / 375	approved	No
687	amnon	common research facility, rumen, rumen liquid, capra hircus, shandong province, china, goat, chinese laoshan milk goat	2028-03-09	v4	1 / 429	approved	No
687	amnon	common research facility, rumen, bos taurus, rumen liquid, shandong province, china, holstein dairy cow	2028-03-09	v4	1 / 593	approved	No
687	amnon	high in bos taurus chinese bohai black beef cattle chinese luxi yellow beef cattle compared to capra hircus goat chinese laoshan milk goat in research facility rumen rumen liquid shandong province china	2028-03-09	v4	1 / 1022	approved	No
687	amnon	common research facility, rumen, bos taurus, rumen liquid, shandong province, china, chinese luxi yellow beef cattle	2028-03-09	v4	1 / 1039	approved	No
687	amnon	common research facility, rumen, bos taurus, rumen liquid, shandong province, china, chinese bohai black beef cattle	2028-03-09	v4	1 / 1147	approved	No

Showing 1 to 14 of 14 entries

This is the development server

Experiment ID: 687

Annotations for experiment: