dbBact

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Experiment ID: 685

Field	Description
name	gastric helicobacter pylori infection perturbs human oral microbiota
sra	prjna419259
doi	https://doi.org/10.7717/peerj.6336
datamd5	bd72d872a826f2c8ff5174cd5cccf0ef
mapmd5	eb945223ac670f7e921605ce7e7c9678

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN evening	0.222222
evening	0.222222
LOWER IN morning	0.222222
LOWER IN helicobacter pylori infectious disease	0.222222
helicobacter pylori infectious disease	0.181818
morning	0.153846
mouth mucosa	0.090909
oral cavity	0.050000
australia	0.032258
LOWER IN control	0.004494
control	0.004396
adult	0.004082
homo sapiens	0.002591

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN evening	0.333333
evening	0.333333
LOWER IN morning	0.333333
LOWER IN helicobacter pylori infectious disease	0.333333
helicobacter pylori infectious disease	0.200000
morning	0.142857
mouth mucosa	0.047619
oral cavity	0.025641
australia	0.016393
LOWER IN control	0.002278
control	0.002227
adult	0.002045
homo sapiens	0.001297

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
adult	1.000000
australia	1.000000
mouth mucosa	1.000000
oral cavity	1.000000
morning	0.166667
LOWER IN evening	0.166667
helicobacter pylori infectious disease	0.166667
LOWER IN control	0.166667
evening	0.166667
LOWER IN morning	0.166667
control	0.166667
LOWER IN helicobacter pylori infectious disease	0.166667

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
adult	1.000000
australia	1.000000
mouth mucosa	1.000000
oral cavity	1.000000
morning	1.000000
LOWER IN evening	1.000000
helicobacter pylori infectious disease	1.000000
LOWER IN control	1.000000
evening	1.000000
LOWER IN morning	1.000000
control	1.000000
LOWER IN helicobacter pylori infectious disease	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
685	amnon	high in control compared to helicobacter pylori infectious disease in homo sapiens adult australia mouth mucosa oral cavity	2028-03-08	v3	1 / 4	approved	No
685	amnon	high in evening compared to morning in homo sapiens adult australia mouth mucosa oral cavity	2028-03-08	v3	1 / 5	approved	No
685	amnon	high in helicobacter pylori infectious disease compared to control in homo sapiens adult australia mouth mucosa oral cavity	2028-03-08	v3	1 / 7	approved	No
685	amnon	dominant homo sapiens, adult, australia, mouth mucosa, oral cavity	2028-03-08	v3	1 / 15	approved	No
685	amnon	high in morning compared to evening in homo sapiens adult australia mouth mucosa oral cavity	2028-03-08	v3	1 / 24	approved	No
685	amnon	common homo sapiens, adult, australia, mouth mucosa, oral cavity	2028-03-08	v3	1 / 27	approved	No

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