dbBact

This is the development server

Experiment ID: 680

Field	Description
name	human gut microbiome response to short-term bifidobacterium-based probiotic treatment
sra	srp194142
doi	https://doi.org/10.1007/s12088-020-00888-1
datamd5	a041c450fb7e33e3174cc72efc472327
mapmd5	54f49577b6acaeed88d8424e4f2e0352

Annotations for experiment:

term enrichment score

Term	Score
novosibirsk	0.666667
bifidobacterium longum probiotic	0.400000
probiotic	0.333333
russia	0.166667
obesity	0.125000
LOWER IN control	0.008969
adult	0.008130
homo sapiens	0.005168
feces	0.004577

Fraction of dbbact annotations with this term covered by the query

Term	Score
novosibirsk	0.500000
bifidobacterium longum probiotic	0.500000
probiotic	0.333333
russia	0.090909
obesity	0.066667
LOWER IN control	0.004545
adult	0.004082
homo sapiens	0.002591
feces	0.002294

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
obesity	1.000000
adult	1.000000
russia	1.000000
novosibirsk	1.000000
probiotic	0.333333
bifidobacterium longum probiotic	0.333333
LOWER IN control	0.333333

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
obesity	1.000000
adult	1.000000
russia	1.000000
novosibirsk	1.000000
probiotic	1.000000
bifidobacterium longum probiotic	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
680	amnon	high in probiotic bifidobacterium longum probiotic compared to control in feces homo sapiens obesity adult russia novosibirsk	2028-03-04	v3	1 / 1	approved	No
680	amnon	dominant feces, homo sapiens, obesity, adult, russia, novosibirsk	2028-03-04	v3	1 / 16	approved	No
680	amnon	common feces, homo sapiens, obesity, adult, russia, novosibirsk	2028-03-04	v3	1 / 85	approved	No

Problems / suggestions? Please visit the dbBact forum