Experiment ID: 673

Field Description
namesalmonella enterica serovar typhimurium temporally modulates the enteric microbiota and host responses to overcome colonization resistance in swine
sraprjna612572
doidoi:10.1128/aem.01569-20
datamd5106cc340508db9b32477907dab4f9a5d
mapmd5c92a3e1fee6011a48a993a81b1ff1724

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.500000
salmonella enterica subsp. enterica serovar typhimurium0.500000
ascending colon0.333333
salmonellosis0.333333
LOWER IN ascending colon0.333333
province of alberta0.250000
LOWER IN salmonellosis0.250000
age 6 weeks0.142857
LOWER IN ileum0.066667
sus scrofa0.058824
pig0.058824
male organism0.058824
ileum0.052632
LOWER IN caecum0.052632
canada0.028571
male0.020000
caecum0.020000
research facility0.005236
LOWER IN control0.004545
control0.004444
Fraction of annotations for the query sequences containing the term
TermScore
sus scrofa1.000000
pig1.000000
canada1.000000
province of alberta1.000000
male organism1.000000
male1.000000
age 6 weeks1.000000
research facility1.000000
ascending colon0.642857
caecum0.642857
control0.571429
salmonella enterica subsp. enterica serovar typhimurium0.428571
salmonellosis0.428571
ileum0.357143
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.142857
LOWER IN salmonellosis0.142857
LOWER IN control0.142857
LOWER IN ileum0.071429
LOWER IN ascending colon0.071429
LOWER IN caecum0.071429
Number of experiments associating the term to the sequence
TermScore
sus scrofa1.000000
pig1.000000
canada1.000000
province of alberta1.000000
male organism1.000000
male1.000000
age 6 weeks1.000000
research facility1.000000
control1.000000
ascending colon1.000000
LOWER IN ileum1.000000
caecum1.000000
LOWER IN salmonella enterica subsp. enterica serovar typhimurium1.000000
LOWER IN salmonellosis1.000000
salmonella enterica subsp. enterica serovar typhimurium1.000000
salmonellosis1.000000
ileum1.000000
LOWER IN ascending colon1.000000
LOWER IN caecum1.000000
LOWER IN control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
673amnondominant sus scrofa, pig, canada, province of alberta, male organism, male, age 6 weeks, research facility, ileum, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis2020-09-28v41 / 13approvedNo
673amnondominant sus scrofa, pig, canada, province of alberta, male organism, male, age 6 weeks, research facility, ileum, control2020-09-28v41 / 14approvedNo
673amnoncommon sus scrofa, pig, canada, province of alberta, male organism, male, age 6 weeks, research facility, ileum, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis2020-09-28v41 / 15approvedNo
673amnondominant sus scrofa, pig, canada, province of alberta, male organism, male, age 6 weeks, research facility, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, ascending colon, caecum2020-09-28v41 / 17approvedNo
673amnondominant sus scrofa, pig, canada, province of alberta, male organism, male, age 6 weeks, research facility, ascending colon, control, caecum2020-09-28v41 / 22approvedNo
673amnon high in salmonella enterica subsp. enterica serovar typhimurium salmonellosis compared to control in sus scrofa pig canada province of alberta male organism male age 6 weeks research facility ascending colon caecum 2020-09-28v41 / 25approvedNo
673amnoncommon sus scrofa, pig, canada, province of alberta, male organism, male, age 6 weeks, research facility, ileum, control2020-09-28v41 / 25approvedNo
673amnon high in salmonella enterica subsp. enterica serovar typhimurium salmonellosis compared to control in sus scrofa pig canada province of alberta male organism male age 6 weeks research facility ascending colon caecum 2020-09-28v41 / 29approvedNo
673amnon high in ileum compared to ascending colon caecum in sus scrofa pig canada province of alberta male organism male age 6 weeks research facility control 2020-09-28v41 / 31approvedNo
673amnon high in control compared to salmonella enterica subsp. enterica serovar typhimurium salmonellosis in sus scrofa pig canada province of alberta male organism male age 6 weeks research facility ascending colon caecum 2020-09-28v41 / 88approvedNo
673amnoncommon sus scrofa, pig, canada, province of alberta, male organism, male, age 6 weeks, research facility, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, ascending colon, caecum2020-09-28v41 / 99approvedNo
673amnon high in control compared to salmonella enterica subsp. enterica serovar typhimurium salmonellosis in sus scrofa pig canada province of alberta male organism male age 6 weeks research facility ascending colon caecum 2020-09-28v41 / 104approvedNo
673amnoncommon sus scrofa, pig, canada, province of alberta, male organism, male, age 6 weeks, research facility, ascending colon, control, caecum2020-09-28v41 / 154approvedNo
673amnon high in ascending colon caecum compared to ileum in sus scrofa pig canada province of alberta male organism male age 6 weeks research facility control 2020-09-28v41 / 228approvedNo

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