dbBact

This is the development server

Experiment ID: 653

Field	Description
name	inter-personal diversity and temporal dynamics of dental, tongue, and salivary microbiota in the healthy oral cavity
sra	prjeb11529
doi	doi:10.1038/s41522-016-0011-0
datamd5	0a0273faf30407e6ef849a08518299d4
mapmd5	7e3ecaa3d51d00256194c3634dcd786e

Annotations for experiment:

term enrichment score

Term	Score
toronto	0.500000
LOWER IN dermal layer of tongue	0.400000
dermal layer of tongue	0.250000
third decade human stage	0.250000
LOWER IN tongue	0.250000
LOWER IN supragingival dental plaque	0.181818
tongue	0.166667
LOWER IN supragingival plaque	0.153846
LOWER IN dentition	0.142857
supragingival dental plaque	0.125000
supragingival plaque	0.105263
LOWER IN saliva	0.086957
dentition	0.071429
canada	0.057143
saliva	0.029851
adult	0.008264
homo sapiens	0.005277

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN dermal layer of tongue	0.500000
toronto	0.333333
dermal layer of tongue	0.200000
LOWER IN tongue	0.200000
third decade human stage	0.142857
LOWER IN supragingival dental plaque	0.125000
tongue	0.111111
LOWER IN supragingival plaque	0.100000
LOWER IN dentition	0.090909
supragingival dental plaque	0.076923
supragingival plaque	0.062500
LOWER IN saliva	0.050000
dentition	0.040000
canada	0.029412
saliva	0.015625
adult	0.004149
homo sapiens	0.002646

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
adult	1.000000
toronto	1.000000
canada	1.000000
third decade human stage	1.000000
tongue	0.333333
dermal layer of tongue	0.333333
LOWER IN dentition	0.333333
LOWER IN supragingival plaque	0.333333
LOWER IN supragingival dental plaque	0.333333
saliva	0.333333
dentition	0.333333
supragingival plaque	0.333333
supragingival dental plaque	0.333333
LOWER IN tongue	0.333333
LOWER IN dermal layer of tongue	0.333333
LOWER IN saliva	0.333333

Number of experiments associating the term to the sequence

Term	Score
tongue	1.000000
dermal layer of tongue	1.000000
LOWER IN dentition	1.000000
LOWER IN supragingival plaque	1.000000
LOWER IN supragingival dental plaque	1.000000
homo sapiens	1.000000
adult	1.000000
toronto	1.000000
canada	1.000000
third decade human stage	1.000000
saliva	1.000000
dentition	1.000000
supragingival plaque	1.000000
supragingival dental plaque	1.000000
LOWER IN tongue	1.000000
LOWER IN dermal layer of tongue	1.000000
LOWER IN saliva	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
653	amnon	high in saliva compared to tongue dermal layer of tongue in homo sapiens adult toronto canada third decade human stage	2020-09-13	v3	1 / 55	approved	No
653	amnon	high in tongue dermal layer of tongue compared to saliva in homo sapiens adult toronto canada third decade human stage	2020-09-13	v3	1 / 72	approved	No
653	amnon	high in dentition supragingival plaque supragingival dental plaque compared to saliva in homo sapiens adult toronto canada third decade human stage	2020-09-13	v3	1 / 157	approved	No
653	amnon	high in dentition supragingival plaque supragingival dental plaque compared to tongue dermal layer of tongue in homo sapiens adult toronto canada third decade human stage	2020-09-13	v3	1 / 205	approved	No
653	amnon	high in saliva compared to dentition supragingival plaque supragingival dental plaque in homo sapiens adult toronto canada third decade human stage	2020-09-13	v3	1 / 291	approved	No
653	amnon	high in tongue dermal layer of tongue compared to dentition supragingival plaque supragingival dental plaque in homo sapiens adult toronto canada third decade human stage	2020-09-13	v3	1 / 306	approved	No

Problems / suggestions? Please visit the dbBact forum