dbBact

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Experiment ID: 640

Field	Description
name	pregnancy-related ecological shifts of salivary microbiota and its association with salivary sex hormones
sra	srp113577
doi	https://doi.org/10.21203/rs.3.rs-54822/v1
datamd5	2985b3b1b47f83b753f0490af4f8f044
mapmd5	5808469a0c2d4ab7020c789953ec4511

Annotations for experiment:

term enrichment score

Term	Score
shanghai district	0.333333
LOWER IN supragingival dental plaque	0.095238
LOWER IN supragingival plaque	0.080000
LOWER IN dentition	0.074074
supragingival dental plaque	0.068966
supragingival plaque	0.057143
LOWER IN saliva	0.044444
dentition	0.037736
saliva	0.014815
female	0.012500
china	0.004717
adult	0.004082
homo sapiens	0.002591

Fraction of dbbact annotations with this term covered by the query

Term	Score
shanghai district	0.200000
LOWER IN supragingival dental plaque	0.066667
LOWER IN supragingival plaque	0.052632
LOWER IN dentition	0.047619
supragingival dental plaque	0.037037
supragingival plaque	0.030303
LOWER IN saliva	0.025641
dentition	0.019608
saliva	0.007519
female	0.006289
china	0.002364
adult	0.002045
homo sapiens	0.001297

Fraction of annotations for the query sequences containing the term

Term	Score
female	1.000000
adult	1.000000
china	1.000000
shanghai district	1.000000
homo sapiens	1.000000
saliva	0.500000
supragingival dental plaque	0.500000
supragingival plaque	0.500000
dentition	0.500000
LOWER IN supragingival dental plaque	0.166667
LOWER IN supragingival plaque	0.166667
LOWER IN dentition	0.166667
LOWER IN saliva	0.166667

Number of experiments associating the term to the sequence

Term	Score
female	1.000000
adult	1.000000
china	1.000000
shanghai district	1.000000
homo sapiens	1.000000
saliva	1.000000
LOWER IN supragingival dental plaque	1.000000
LOWER IN supragingival plaque	1.000000
LOWER IN dentition	1.000000
supragingival dental plaque	1.000000
supragingival plaque	1.000000
dentition	1.000000
LOWER IN saliva	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
640	amnon	dominant female, adult, china, shanghai district, homo sapiens, saliva	2020-08-22	v4	1 / 17	approved	No
640	amnon	dominant female, adult, china, shanghai district, homo sapiens, supragingival dental plaque, supragingival plaque, dentition	2020-08-22	v4	1 / 25	approved	No
640	amnon	high in supragingival plaque supragingival dental plaque dentition compared to saliva in female adult china shanghai district homo sapiens	2020-08-22	v4	1 / 47	approved	No
640	amnon	common female, adult, china, shanghai district, homo sapiens, supragingival dental plaque, supragingival plaque, dentition	2020-08-22	v4	1 / 65	approved	No
640	amnon	common female, adult, china, shanghai district, homo sapiens, saliva	2020-08-22	v4	1 / 117	approved	No
640	amnon	high in saliva compared to supragingival dental plaque supragingival plaque dentition in female adult china shanghai district homo sapiens	2020-08-22	v4	1 / 232	approved	No

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