Experiment ID: 617

Field Description
nameshift in the cow milk microbiota during alpine pasture as analyzed by culture dependent and high-throughput sequencing techniques
sraprjna528228
doihttps://doi.org/10.1016/j.fm.2020.103504
datamd55c104e44bec3c02ddd7f3a759a18e21b
mapmd515f847d79f0670c20eb7e2f8ebf13485

Annotations for experiment:

term enrichment score
TermScore
lowland pasture0.434783
lowland farm0.434783
alpine pasture0.352941
cow milk (fluid)0.333333
cow milk (raw)0.333333
alpine0.260870
milk0.250000
LOWER IN alpine0.181818
LOWER IN alpine pasture0.181818
LOWER IN lowland pasture0.181818
LOWER IN lowland farm0.181818
october0.181818
LOWER IN june0.181818
june0.181818
LOWER IN october0.181818
LOWER IN autumn season0.080000
LOWER IN spring season0.068966
autumn season0.057143
spring season0.057143
italy0.031250
farm0.023256
Fraction of dbbact annotations with this term covered by the query
TermScore
lowland pasture0.333333
lowland farm0.333333
LOWER IN alpine0.333333
LOWER IN alpine pasture0.333333
alpine pasture0.333333
LOWER IN lowland pasture0.333333
LOWER IN lowland farm0.333333
october0.333333
LOWER IN june0.333333
june0.333333
LOWER IN october0.333333
cow milk (fluid)0.200000
cow milk (raw)0.200000
alpine0.200000
milk0.142857
LOWER IN autumn season0.058824
LOWER IN spring season0.047619
autumn season0.037037
spring season0.037037
italy0.015873
farm0.011765
Fraction of annotations for the query sequences containing the term
TermScore
milk1.000000
cow milk (fluid)1.000000
cow milk (raw)1.000000
italy1.000000
farm1.000000
lowland pasture0.625000
lowland farm0.625000
alpine0.375000
alpine pasture0.375000
LOWER IN alpine0.125000
LOWER IN alpine pasture0.125000
LOWER IN lowland pasture0.125000
LOWER IN lowland farm0.125000
autumn season0.125000
october0.125000
LOWER IN june0.125000
LOWER IN spring season0.125000
june0.125000
LOWER IN autumn season0.125000
LOWER IN october0.125000
spring season0.125000
Number of experiments associating the term to the sequence
TermScore
milk1.000000
cow milk (fluid)1.000000
cow milk (raw)1.000000
italy1.000000
farm1.000000
lowland pasture1.000000
lowland farm1.000000
LOWER IN alpine1.000000
LOWER IN alpine pasture1.000000
alpine1.000000
alpine pasture1.000000
LOWER IN lowland pasture1.000000
LOWER IN lowland farm1.000000
autumn season1.000000
october1.000000
LOWER IN june1.000000
LOWER IN spring season1.000000
june1.000000
LOWER IN autumn season1.000000
LOWER IN october1.000000
spring season1.000000

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