dbBact

This is the development server

Experiment ID: 594

Field	Description
name	response of the human gut and saliva microbiome to urbanization in cameroon
sra	prjeb30836
doi	https://doi.org/10.1038/s41598-020-59849-9
datamd5	bbf72b9312d0d5d8674bf523f2236feb
mapmd5	33d3020deb1f2ff8fd5d173c99cf421e

Annotations for experiment:

term enrichment score

Term	Score
ngoantet	0.352941
yaounde	0.352941
cameroon	0.333333
LOWER IN yaounde	0.181818
LOWER IN ngoantet	0.181818
LOWER IN rural community	0.086957
LOWER IN city	0.074074
rural community	0.056075
city	0.040268
saliva	0.014599
adult	0.004082
homo sapiens	0.002591
feces	0.002293

Fraction of dbbact annotations with this term covered by the query

Term	Score
ngoantet	0.333333
LOWER IN yaounde	0.333333
yaounde	0.333333
LOWER IN ngoantet	0.333333
cameroon	0.200000
LOWER IN rural community	0.066667
LOWER IN city	0.052632
rural community	0.030303
city	0.021277
saliva	0.007519
adult	0.002045
homo sapiens	0.001297
feces	0.001148

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
cameroon	1.000000
adult	1.000000
feces	0.750000
ngoantet	0.375000
rural community	0.375000
city	0.375000
yaounde	0.375000
saliva	0.250000
LOWER IN city	0.125000
LOWER IN yaounde	0.125000
LOWER IN rural community	0.125000
LOWER IN ngoantet	0.125000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
feces	1.000000
cameroon	1.000000
adult	1.000000
ngoantet	1.000000
rural community	1.000000
LOWER IN city	1.000000
LOWER IN yaounde	1.000000
city	1.000000
yaounde	1.000000
saliva	1.000000
LOWER IN rural community	1.000000
LOWER IN ngoantet	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
594	amnon	dominant adult, cameroon, feces, homo sapiens, ngoantet, rural community	2020-03-12	v4	1 / 8	approved	No
594	amnon	dominant adult, cameroon, feces, homo sapiens, city, yaounde	2020-03-12	v4	1 / 13	approved	No
594	amnon	dominant adult, cameroon, homo sapiens, saliva	2020-03-12	v4	1 / 20	approved	No
594	amnon	high in yaounde city compared to rural community ngoantet in adult cameroon feces homo sapiens	2020-03-12	v4	1 / 70	approved	No
594	amnon	common adult, cameroon, homo sapiens, saliva	2020-03-12	v4	1 / 113	approved	No
594	amnon	common adult, cameroon, feces, homo sapiens, ngoantet, rural community	2020-03-12	v4	1 / 136	approved	No
594	amnon	common adult, cameroon, feces, homo sapiens, city, yaounde	2020-03-12	v4	1 / 154	approved	No
594	amnon	high in ngoantet rural community compared to city yaounde in homo sapiens feces cameroon adult	2020-03-12	v4	1 / 172	approved	No

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