dbBact

This is the development server

Experiment ID: 594

Field	Description
name	response of the human gut and saliva microbiome to urbanization in cameroon
sra	prjeb30836
doi	https://doi.org/10.1038/s41598-020-59849-9
datamd5	bbf72b9312d0d5d8674bf523f2236feb
mapmd5	33d3020deb1f2ff8fd5d173c99cf421e

Annotations for experiment:

term enrichment score

Term	Score
cameroon	0.500000
ngoantet	0.428571
yaounde	0.428571
LOWER IN yaounde	0.200000
LOWER IN ngoantet	0.200000
LOWER IN rural community	0.125000
LOWER IN city	0.111111
rural community	0.101695
city	0.075000
saliva	0.029412
adult	0.008264
homo sapiens	0.005277
feces	0.004605

Fraction of dbbact annotations with this term covered by the query

Term	Score
ngoantet	0.500000
LOWER IN yaounde	0.500000
yaounde	0.500000
LOWER IN ngoantet	0.500000
cameroon	0.333333
LOWER IN rural community	0.125000
LOWER IN city	0.100000
rural community	0.058824
city	0.041667
saliva	0.015625
adult	0.004149
homo sapiens	0.002646
feces	0.002309

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
adult	1.000000
cameroon	1.000000
feces	0.750000
rural community	0.375000
ngoantet	0.375000
city	0.375000
yaounde	0.375000
saliva	0.250000
LOWER IN city	0.125000
LOWER IN yaounde	0.125000
LOWER IN rural community	0.125000
LOWER IN ngoantet	0.125000

Number of experiments associating the term to the sequence

Term	Score
rural community	1.000000
ngoantet	1.000000
LOWER IN city	1.000000
LOWER IN yaounde	1.000000
feces	1.000000
homo sapiens	1.000000
adult	1.000000
cameroon	1.000000
city	1.000000
yaounde	1.000000
saliva	1.000000
LOWER IN rural community	1.000000
LOWER IN ngoantet	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
594	amnon	dominant feces, homo sapiens, adult, rural community, cameroon, ngoantet	2020-03-12	v4	1 / 8	approved	No
594	amnon	dominant feces, homo sapiens, city, adult, cameroon, yaounde	2020-03-12	v4	1 / 13	approved	No
594	amnon	dominant homo sapiens, saliva, adult, cameroon	2020-03-12	v4	1 / 20	approved	No
594	amnon	high in city yaounde compared to rural community ngoantet in feces homo sapiens adult cameroon	2020-03-12	v4	1 / 70	approved	No
594	amnon	common homo sapiens, saliva, adult, cameroon	2020-03-12	v4	1 / 113	approved	No
594	amnon	common feces, homo sapiens, adult, rural community, cameroon, ngoantet	2020-03-12	v4	1 / 136	approved	No
594	amnon	common feces, homo sapiens, city, adult, cameroon, yaounde	2020-03-12	v4	1 / 154	approved	No
594	amnon	high in rural community ngoantet compared to city yaounde in feces homo sapiens adult cameroon	2020-03-12	v4	1 / 172	approved	No

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