Experiment ID: 59

Field Description
namestrain diversity and host specificity in a specialized gut symbiont of honeybees and bumblebees
srasrp071118
datamd5da3f4d2151d8220006667f471908d7fd
mapmd53a82ebefdbe7074f8c440414c98f9b17

Annotations for experiment:

term enrichment score
TermScore
apis mellifera0.128205
trigona hyalinata0.102564
apis dorsata0.102564
trigona spinipes0.102564
centris atripes0.102564
sundatrigona moorei0.102564
geniotrigona thoracica0.102564
apis florea0.102564
apis andreniformis0.102564
apis cerana0.102564
heterotrigona itama0.102564
paratrigona lineata0.102564
tetragonula fuscobalteata0.102564
bombus bifarius0.102564
bombus pennsylvanicus0.093023
LOWER IN china0.085106
austin0.055556
LOWER IN australia0.055556
LOWER IN malaysia0.055556
LOWER IN seoul0.055556
seoul0.050000
malaysia0.045455
state of texas0.038462
pathogen0.032258
digestive system0.032242
australia0.021277
united states of america0.003249
Fraction of dbbact annotations with this term covered by the query
TermScore
trigona hyalinata0.333333
apis dorsata0.333333
trigona spinipes0.333333
austin0.333333
LOWER IN australia0.333333
LOWER IN malaysia0.333333
LOWER IN seoul0.333333
centris atripes0.333333
sundatrigona moorei0.333333
geniotrigona thoracica0.333333
apis florea0.333333
apis andreniformis0.333333
apis cerana0.333333
heterotrigona itama0.333333
paratrigona lineata0.333333
tetragonula fuscobalteata0.333333
bombus bifarius0.333333
bombus pennsylvanicus0.200000
LOWER IN china0.142857
seoul0.142857
apis mellifera0.111111
malaysia0.090909
state of texas0.052632
pathogen0.034483
digestive system0.016393
australia0.016393
united states of america0.001669
Fraction of annotations for the query sequences containing the term
TermScore
digestive system0.969697
apis mellifera0.151515
trigona hyalinata0.060606
apis dorsata0.060606
trigona spinipes0.060606
united states of america0.060606
LOWER IN china0.060606
centris atripes0.060606
sundatrigona moorei0.060606
geniotrigona thoracica0.060606
bombus pennsylvanicus0.060606
apis florea0.060606
apis andreniformis0.060606
apis cerana0.060606
heterotrigona itama0.060606
paratrigona lineata0.060606
tetragonula fuscobalteata0.060606
bombus bifarius0.060606
austin0.030303
LOWER IN australia0.030303
LOWER IN malaysia0.030303
LOWER IN seoul0.030303
pathogen0.030303
australia0.030303
malaysia0.030303
seoul0.030303
state of texas0.030303
Number of experiments associating the term to the sequence
TermScore
trigona hyalinata1.000000
digestive system1.000000
apis dorsata1.000000
trigona spinipes1.000000
apis mellifera1.000000
austin1.000000
united states of america1.000000
LOWER IN australia1.000000
LOWER IN malaysia1.000000
LOWER IN seoul1.000000
LOWER IN china1.000000
centris atripes1.000000
sundatrigona moorei1.000000
geniotrigona thoracica1.000000
bombus pennsylvanicus1.000000
apis florea1.000000
apis andreniformis1.000000
apis cerana1.000000
heterotrigona itama1.000000
paratrigona lineata1.000000
tetragonula fuscobalteata1.000000
bombus bifarius1.000000
pathogen1.000000
australia1.000000
malaysia1.000000
seoul1.000000
state of texas1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
59amnoncandidate pathogen (Melissococcus plutonius). Causes European Foulbrood of honeybees (other pathogen, apis mellifera)2017-02-02v41 / 1approvedNo
59amnon high in australia malaysia seoul united states of america state of texas compared to china in apis mellifera digestive system 2017-02-02v41 / 1approvedNo
59amnondominant bombus bifarius, digestive system2017-02-03v41 / 6approvedNo
59amnoncommon bombus bifarius, digestive system2017-02-03v41 / 6approvedNo
59amnondominant tetragonula fuscobalteata, digestive system2017-02-02v41 / 7approvedNo
59amnoncommon tetragonula fuscobalteata, digestive system2017-02-02v41 / 8approvedNo
59amnondominant geniotrigona thoracica, digestive system2017-02-03v41 / 9approvedNo
59amnoncommon apis cerana, digestive system2017-02-02v41 / 10approvedNo
59amnoncommon paratrigona lineata, digestive system2017-02-03v41 / 10approvedNo
59amnondominant centris atripes, digestive system2017-02-03v41 / 11approvedNo
59amnon high in compared to in bombus pennsylvanicus digestive system 2017-02-02v41 / 11approvedNo
59amnoncommon heterotrigona itama, digestive system2017-02-03v41 / 11approvedNo
59amnondominant heterotrigona itama, digestive system2017-02-03v41 / 12approvedNo
59amnondominant paratrigona lineata, digestive system2017-02-03v41 / 12approvedNo
59amnoncommon apis andreniformis, digestive system2017-02-02v41 / 13approvedNo
59amnondominant apis cerana, digestive system2017-02-02v41 / 13approvedNo
59amnondominant trigona spinipes, digestive system2017-02-03v41 / 13approvedNo
59amnondominant sundatrigona moorei, digestive system2017-02-03v41 / 13approvedNo
59amnondominant apis florea, digestive system2017-02-02v41 / 15approvedNo
59amnondominant apis andreniformis, digestive system2017-02-02v41 / 15approvedNo
59amnondominant trigona hyalinata, digestive system2017-02-02v41 / 15approvedNo
59amnoncommon apis mellifera, digestive system2017-02-02v41 / 16approvedNo
59amnoncommon apis florea, digestive system2017-02-02v41 / 16approvedNo
59amnoncommon bombus pennsylvanicus, digestive system2017-02-02v41 / 17approvedNo
59amnondominant apis mellifera, digestive system2017-02-02v41 / 18approvedNo
59amnondominant apis dorsata, digestive system2017-02-02v41 / 18approvedNo
59amnoncommon geniotrigona thoracica, digestive system2017-02-03v41 / 19approvedNo
59amnoncommon centris atripes, digestive system2017-02-03v41 / 20approvedNo
59amnoncommon sundatrigona moorei, digestive system2017-02-03v41 / 20approvedNo
59amnon high in austin united states of america compared to australia malaysia seoul china in apis mellifera digestive system 2017-02-02v41 / 25approvedNo
59amnoncommon trigona spinipes, digestive system2017-02-03v41 / 30approvedNo
59amnoncommon apis dorsata, digestive system2017-02-02v41 / 38approvedNo
59amnoncommon trigona hyalinata, digestive system2017-02-02v41 / 43approvedNo

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