dbBact

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Experiment ID: 589

Field	Description
name	fiber-mediated nourishment of gut microbiota protects against diet-induced obesity by restoring il-22-mediated colonic health
sra	prjeb23793
doi	https://doi.org/10.1016/j.chom.2017.11.003
datamd5	7ae581305fb91bb0925fcca0489390aa
mapmd5	88d7627fa8d91684d3c1da74ed64847e

Annotations for experiment:

term enrichment score

Term	Score
high fat diet + inulin	0.375000
low fat diet	0.363636
LOWER IN low fat diet	0.250000
jackson laboratories	0.222222
state of georgia	0.222222
LOWER IN high fat diet + inulin	0.166667
mouse chow	0.114286
high fat diet	0.109091
LOWER IN mouse chow	0.090909
LOWER IN high fat diet	0.083333
c57bl/6	0.080000
mouse	0.029851
mus musculus	0.027027
research facility	0.010417
united states of america	0.006645
feces	0.004577

Fraction of dbbact annotations with this term covered by the query

Term	Score
high fat diet + inulin	0.500000
LOWER IN high fat diet + inulin	0.500000
low fat diet	0.333333
LOWER IN low fat diet	0.333333
jackson laboratories	0.125000
state of georgia	0.125000
LOWER IN high fat diet	0.071429
high fat diet	0.066667
mouse chow	0.066667
LOWER IN mouse chow	0.058824
c57bl/6	0.041667
mouse	0.015152
mus musculus	0.013699
research facility	0.005236
united states of america	0.003333
feces	0.002294

Fraction of annotations for the query sequences containing the term

Term	Score
mouse	1.000000
mus musculus	1.000000
c57bl/6	1.000000
research facility	1.000000
feces	1.000000
jackson laboratories	1.000000
united states of america	1.000000
state of georgia	1.000000
mouse chow	0.400000
low fat diet	0.400000
high fat diet	0.300000
high fat diet + inulin	0.300000
LOWER IN mouse chow	0.200000
LOWER IN low fat diet	0.200000
LOWER IN high fat diet	0.100000
LOWER IN high fat diet + inulin	0.100000

Number of experiments associating the term to the sequence

Term	Score
mouse	1.000000
mus musculus	1.000000
c57bl/6	1.000000
research facility	1.000000
feces	1.000000
jackson laboratories	1.000000
united states of america	1.000000
state of georgia	1.000000
high fat diet	1.000000
mouse chow	1.000000
low fat diet	1.000000
high fat diet + inulin	1.000000
LOWER IN mouse chow	1.000000
LOWER IN low fat diet	1.000000
LOWER IN high fat diet	1.000000
LOWER IN high fat diet + inulin	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
589	amnon	dominant mouse, mus musculus, c57bl/6, research facility, feces, jackson laboratories, united states of america, state of georgia, high fat diet + inulin	2020-02-10	v4	1 / 12	approved	No
589	amnon	dominant mouse, mus musculus, c57bl/6, research facility, feces, jackson laboratories, mouse chow, low fat diet, united states of america, state of georgia	2020-02-10	v4	1 / 16	approved	No
589	amnon	dominant in high fat diet supplemented with cellulose in mice feces (dominant mouse, mus musculus, c57bl/6, research facility, feces, jackson laboratories, united states of america, state of georgia, high fat diet)	2020-02-10	v4	1 / 17	approved	No
589	amnon	high in high fat diet + inulin compared to low fat diet mouse chow in mouse mus musculus c57bl/6 research facility feces jackson laboratories united states of america state of georgia	2020-02-10	v4	1 / 19	approved	No
589	amnon	high in mouse chow low fat diet compared to high fat diet + inulin in mouse mus musculus c57bl/6 research facility feces jackson laboratories united states of america state of georgia	2020-02-10	v4	1 / 51	approved	No
589	amnon	high in mouse chow low fat diet compared to high fat diet in mouse mus musculus c57bl/6 research facility feces jackson laboratories united states of america state of georgia	2020-02-10	v4	1 / 74	approved	No
589	amnon	high in high fat diet compared to mouse chow low fat diet in mouse mus musculus c57bl/6 research facility feces jackson laboratories united states of america state of georgia	2020-02-10	v4	1 / 75	approved	No
589	amnon	common mouse, mus musculus, c57bl/6, research facility, feces, jackson laboratories, united states of america, state of georgia, high fat diet + inulin	2020-02-10	v4	1 / 78	approved	No
589	amnon	common mouse, mus musculus, c57bl/6, research facility, feces, jackson laboratories, mouse chow, low fat diet, united states of america, state of georgia	2020-02-10	v4	1 / 151	approved	No
589	amnon	common in high fat diet supplemented with cellulose in mice feces (common mouse, mus musculus, c57bl/6, research facility, feces, jackson laboratories, united states of america, state of georgia, high fat diet)	2020-02-10	v4	1 / 172	approved	No

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