Experiment ID: 542

Field Description
namemicrobiome profiles of ligature-induced periodontitis in nonhuman primates across the lifespan
sraprjna516659
doidoi:10.1128/iai.00067-19
datamd506eb0275f1fcff0a0aeb44c1410bf30f
mapmd5a965eab1012d728a618c48a9f2a002f3

Annotations for experiment:

term enrichment score
TermScore
age 12-23 years0.500000
age 1-7 years0.400000
puerto rico0.333333
LOWER IN induced periodontitis0.285714
induced periodontitis0.285714
macaca mulatta0.222222
LOWER IN age 12-23 years0.166667
LOWER IN age 1-7 years0.153846
LOWER IN periodontitis0.117647
monkey0.105263
subgingival plaque0.100000
periodontitis0.095238
LOWER IN child0.080000
dentition0.076923
LOWER IN adult0.057143
child0.032258
research facility0.010471
LOWER IN control0.009050
control0.008850
adult0.008230
Fraction of dbbact annotations with this term covered by the query
TermScore
age 12-23 years0.500000
LOWER IN induced periodontitis0.500000
LOWER IN age 12-23 years0.500000
induced periodontitis0.500000
LOWER IN age 1-7 years0.333333
age 1-7 years0.333333
puerto rico0.200000
macaca mulatta0.125000
LOWER IN periodontitis0.083333
LOWER IN child0.066667
periodontitis0.062500
monkey0.055556
subgingival plaque0.052632
dentition0.040000
LOWER IN adult0.040000
child0.016667
research facility0.005263
LOWER IN control0.004630
control0.004525
adult0.004149
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
dentition1.000000
macaca mulatta1.000000
puerto rico1.000000
subgingival plaque1.000000
monkey1.000000
adult0.500000
age 12-23 years0.500000
child0.500000
age 1-7 years0.500000
control0.200000
LOWER IN induced periodontitis0.200000
LOWER IN periodontitis0.200000
induced periodontitis0.200000
periodontitis0.200000
LOWER IN control0.200000
LOWER IN child0.100000
LOWER IN age 1-7 years0.100000
LOWER IN adult0.100000
LOWER IN age 12-23 years0.100000
Number of experiments associating the term to the sequence
TermScore
adult1.000000
age 12-23 years1.000000
LOWER IN child1.000000
LOWER IN age 1-7 years1.000000
research facility1.000000
dentition1.000000
macaca mulatta1.000000
puerto rico1.000000
subgingival plaque1.000000
monkey1.000000
child1.000000
age 1-7 years1.000000
control1.000000
LOWER IN induced periodontitis1.000000
LOWER IN periodontitis1.000000
LOWER IN adult1.000000
LOWER IN age 12-23 years1.000000
induced periodontitis1.000000
periodontitis1.000000
LOWER IN control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
542amnonhigher in ligature induced periodontitis compared to control timepoints ( high in induced periodontitis periodontitis compared to control in research facility dentition adult macaca mulatta puerto rico subgingival plaque monkey age 12-23 years )2019-08-01v41 / 11approvedNo
542amnonhigher in ligature induced periodontitis compared to control timepoints ( high in induced periodontitis periodontitis compared to control in research facility dentition macaca mulatta child puerto rico subgingival plaque monkey age 1-7 years )2019-08-01v41 / 15approvedNo
542amnonlower in ligature induced periodontitis compared to control timepoints ( high in control compared to induced periodontitis periodontitis in research facility dentition macaca mulatta child puerto rico subgingival plaque monkey age 1-7 years )2019-08-01v41 / 17approvedNo
542amnondominant research facility, dentition, adult, macaca mulatta, puerto rico, subgingival plaque, monkey, age 12-23 years2019-08-01v41 / 19approvedNo
542amnondominant research facility, dentition, macaca mulatta, child, puerto rico, subgingival plaque, monkey, age 1-7 years2019-08-01v41 / 19approvedNo
542amnon high in child age 1-7 years compared to adult age 12-23 years in research facility dentition macaca mulatta puerto rico subgingival plaque monkey 2019-08-01v41 / 23approvedNo
542amnonlower in ligature induced periodontitis compared to control timepoints ( high in control compared to induced periodontitis periodontitis in research facility dentition adult macaca mulatta puerto rico subgingival plaque monkey age 12-23 years )2019-08-01v41 / 33approvedNo
542amnoncommon research facility, dentition, macaca mulatta, child, puerto rico, subgingival plaque, monkey, age 1-7 years2019-08-01v41 / 41approvedNo
542amnoncommon research facility, dentition, adult, macaca mulatta, puerto rico, subgingival plaque, monkey, age 12-23 years2019-08-01v41 / 208approvedNo
542amnon high in adult age 12-23 years compared to child age 1-7 years in research facility dentition macaca mulatta puerto rico subgingival plaque monkey 2019-08-01v41 / 337approvedNo

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