Experiment ID: 535

Field Description
namedeciphering the complex interplay between microbiota, hpv, inflammation and cancer through cervicovaginal metabolic profiling
sraprjna518153
doihttps://doi.org/10.1016/j.ebiom.2019.04.028
datamd5664052bd3b6160d437317463fda9869e
mapmd514ecb5f6aca60ae26937360b66313a71

Annotations for experiment:

term enrichment score
TermScore
phoenix0.666667
dysplasia of cervix0.428571
state of arizona0.333333
invasive carcinoma0.333333
invasive cervical carcinoma0.333333
cervical carcinoma0.333333
LOWER IN dysplasia of cervix0.200000
vagina0.117647
female0.024691
control0.008785
LOWER IN control0.008772
adult0.008130
united states of america0.006645
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
phoenix0.500000
invasive carcinoma0.500000
invasive cervical carcinoma0.500000
cervical carcinoma0.500000
dysplasia of cervix0.500000
LOWER IN dysplasia of cervix0.500000
state of arizona0.200000
vagina0.062500
female0.012500
LOWER IN control0.004545
control0.004444
adult0.004082
united states of america0.003333
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
vagina1.000000
female1.000000
adult1.000000
united states of america1.000000
phoenix1.000000
state of arizona1.000000
dysplasia of cervix0.375000
control0.375000
invasive carcinoma0.250000
invasive cervical carcinoma0.250000
cervical carcinoma0.250000
LOWER IN dysplasia of cervix0.125000
LOWER IN control0.125000
Number of experiments associating the term to the sequence
TermScore
homo sapiens1.000000
vagina1.000000
female1.000000
adult1.000000
united states of america1.000000
phoenix1.000000
state of arizona1.000000
invasive carcinoma1.000000
invasive cervical carcinoma1.000000
cervical carcinoma1.000000
dysplasia of cervix1.000000
control1.000000
LOWER IN dysplasia of cervix1.000000
LOWER IN control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
535amnoncommon in healthy adult vaginal samples (common homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, control)2019-07-25v41 / 7approvedNo
535amnon high in dysplasia of cervix compared to control in homo sapiens vagina female adult united states of america phoenix state of arizona 2019-07-25v41 / 9approvedNo
535amnonhigh freq. in healthy adult vaginal samples (dominant homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, control)2019-07-25v41 / 11approvedNo
535amnoncommon in adult vaginal samples with ICC (common homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, invasive carcinoma, invasive cervical carcinoma, cervical carcinoma)2019-07-25v41 / 11approvedNo
535amnonhcommon in adult vaginal samples with cervical dysplasia (common homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, dysplasia of cervix)2019-07-25v41 / 11approvedNo
535amnonhigh freq. in adult vaginal samples with cervical dysplasia (dominant homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, dysplasia of cervix)2019-07-25v41 / 16approvedNo
535amnon high in control compared to dysplasia of cervix in homo sapiens vagina female adult united states of america phoenix state of arizona 2019-07-25v41 / 16approvedNo
535amnonhigh freq. in adult vaginal samples with ICC (dominant homo sapiens, vagina, female, adult, united states of america, phoenix, state of arizona, invasive carcinoma, invasive cervical carcinoma, cervical carcinoma)2019-07-25v41 / 20approvedNo

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