Experiment ID: 495

Field Description
name16s rrna amplicon sequencing characterization of caecal microbiome composition of broilers and free-range slow-growing chickens throughout their productive lifespan
sraprjeb29068
datamd54a5eea4a9286da97258f0d922dc86205
mapmd59cdf9d684da662fd5c264cbdca543e1a

Annotations for experiment:

term enrichment score
TermScore
free range chicken0.541667
age 3 weeks0.190476
broiler chicken0.174757
age 6 weeks0.160000
age 12 weeks0.153846
age 4 days0.153846
age 3 days0.153846
age 2 weeks0.142857
age 8 weeks0.133333
age 4 weeks0.111111
chicken0.090909
gallus gallus0.086957
LOWER IN typhlitis0.083333
LOWER IN intestinal disease0.083333
LOWER IN free range chicken0.083333
typhlitis0.083333
intestinal disease0.083333
LOWER IN broiler chicken0.076923
kingdom of spain0.074074
LOWER IN disease0.071429
disease0.066667
farm0.045455
caecum0.039216
LOWER IN control0.008264
control0.008097
Fraction of dbbact annotations with this term covered by the query
TermScore
free range chicken0.500000
LOWER IN typhlitis0.500000
LOWER IN intestinal disease0.500000
age 12 weeks0.500000
LOWER IN free range chicken0.500000
age 4 days0.500000
typhlitis0.500000
intestinal disease0.500000
age 3 days0.500000
age 2 weeks0.333333
LOWER IN broiler chicken0.250000
age 8 weeks0.250000
age 3 weeks0.200000
LOWER IN disease0.166667
age 6 weeks0.142857
age 4 weeks0.142857
disease0.125000
broiler chicken0.111111
chicken0.047619
gallus gallus0.045455
kingdom of spain0.038462
farm0.023256
caecum0.020000
LOWER IN control0.004545
control0.004444
Fraction of annotations for the query sequences containing the term
TermScore
gallus gallus1.000000
chicken1.000000
caecum1.000000
kingdom of spain1.000000
farm1.000000
free range chicken0.590909
broiler chicken0.409091
age 6 weeks0.181818
age 3 weeks0.181818
age 12 weeks0.090909
age 8 weeks0.090909
age 4 weeks0.090909
age 2 weeks0.090909
age 4 days0.090909
age 3 days0.090909
control0.045455
LOWER IN typhlitis0.045455
LOWER IN disease0.045455
LOWER IN intestinal disease0.045455
LOWER IN broiler chicken0.045455
LOWER IN free range chicken0.045455
typhlitis0.045455
LOWER IN control0.045455
disease0.045455
intestinal disease0.045455
Number of experiments associating the term to the sequence
TermScore
gallus gallus1.000000
chicken1.000000
caecum1.000000
kingdom of spain1.000000
farm1.000000
free range chicken1.000000
control1.000000
LOWER IN typhlitis1.000000
LOWER IN disease1.000000
LOWER IN intestinal disease1.000000
age 6 weeks1.000000
age 3 weeks1.000000
age 12 weeks1.000000
broiler chicken1.000000
LOWER IN broiler chicken1.000000
age 8 weeks1.000000
age 4 weeks1.000000
age 2 weeks1.000000
LOWER IN free range chicken1.000000
age 4 days1.000000
typhlitis1.000000
LOWER IN control1.000000
disease1.000000
intestinal disease1.000000
age 3 days1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v41 / 4approvedNo
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v41 / 6approvedNo
495amnondominant gallus gallus, chicken, caecum, broiler chicken, age 3 days, kingdom of spain, farm2019-03-03v41 / 12approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v41 / 16approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v41 / 18approvedNo
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v41 / 19approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v41 / 20approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v41 / 27approvedNo
495amnondominant gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v41 / 27approvedNo
495amnondominant gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v41 / 28approvedNo
495amnon high in typhlitis disease intestinal disease compared to control in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v41 / 48approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 4 days2019-03-03v41 / 69approvedNo
495amnon high in broiler chicken compared to free range chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v41 / 90approvedNo
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 2 weeks2019-03-03v41 / 134approvedNo
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 4 weeks2019-03-03v41 / 185approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 8 weeks2019-03-03v41 / 189approvedNo
495amnon high in free range chicken compared to broiler chicken in gallus gallus chicken caecum kingdom of spain farm age 3 weeks 2019-03-03v41 / 199approvedNo
495amnoncommon gallus gallus, chicken, caecum, broiler chicken, kingdom of spain, farm, age 6 weeks2019-03-03v41 / 210approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 12 weeks2019-03-03v41 / 214approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 3 weeks2019-03-03v41 / 236approvedNo
495amnoncommon gallus gallus, chicken, caecum, kingdom of spain, farm, free range chicken, age 6 weeks2019-03-03v41 / 290approvedNo
495amnon high in control compared to typhlitis disease intestinal disease in gallus gallus chicken caecum kingdom of spain farm free range chicken 2019-03-03v41 / 412approvedNo

Problems / suggestions? Please visit the dbBact forum