dbBact

This is the development server

Experiment ID: 410

Field	Description
name	compositional and temporal changes in the gut microbiome of pediatric ulcerative colitis patients are linked to disease course
sra	prjna436359
datamd5	24f95e8c7cd67f37f1251c22d179490e
mapmd5	fd2b4f7d06cf59a51bf0b935ab211181

Annotations for experiment:

term enrichment score

Term	Score
mild	0.333333
LOWER IN severe	0.333333
severe	0.333333
LOWER IN mild	0.333333
biopsy site	0.222222
LOWER IN biopsy	0.153846
LOWER IN biopsy site	0.153846
LOWER IN rectum	0.105263
biopsy	0.105263
rectum	0.080000
LOWER IN ulcerative colitis	0.045455
ulcerative colitis	0.044944
LOWER IN feces	0.030769
child	0.016129
united states of america	0.003333
homo sapiens	0.002591
feces	0.002291

Fraction of dbbact annotations with this term covered by the query

Term	Score
mild	0.333333
LOWER IN severe	0.333333
severe	0.333333
LOWER IN mild	0.333333
LOWER IN biopsy	0.142857
LOWER IN biopsy site	0.142857
biopsy site	0.142857
LOWER IN rectum	0.076923
biopsy	0.058824
rectum	0.043478
LOWER IN ulcerative colitis	0.024390
ulcerative colitis	0.023256
LOWER IN feces	0.016949
child	0.008130
united states of america	0.001669
homo sapiens	0.001297
feces	0.001148

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
child	1.000000
united states of america	1.000000
ulcerative colitis	0.666667
feces	0.500000
rectum	0.500000
biopsy	0.500000
biopsy site	0.500000
mild	0.333333
LOWER IN severe	0.333333
LOWER IN ulcerative colitis	0.333333
severe	0.333333
LOWER IN mild	0.333333
LOWER IN biopsy	0.166667
LOWER IN rectum	0.166667
LOWER IN biopsy site	0.166667
LOWER IN feces	0.166667

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
child	1.000000
united states of america	1.000000
feces	1.000000
LOWER IN biopsy	1.000000
LOWER IN rectum	1.000000
LOWER IN biopsy site	1.000000
ulcerative colitis	1.000000
rectum	1.000000
biopsy	1.000000
biopsy site	1.000000
LOWER IN feces	1.000000
mild	1.000000
LOWER IN severe	1.000000
LOWER IN ulcerative colitis	1.000000
severe	1.000000
LOWER IN mild	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
410	amnon	higher in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in severe ulcerative colitis compared to mild in homo sapiens child united states of america biopsy biopsy site rectum )	2018-11-22	v4	1 / 5	approved	No
410	amnon	lower in severe treatment naive ulcerative colitis patients compared to mild ( high in severe ulcerative colitis compared to mild in homo sapiens child united states of america feces )	2018-11-22	v4	1 / 18	approved	No
410	amnon	lower in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in mild compared to severe ulcerative colitis in homo sapiens child united states of america biopsy biopsy site rectum )	2018-11-22	v4	1 / 26	approved	No
410	amnon	lower in severe treatment naive ulcerative colitis patients compared to mild ( high in mild compared to severe ulcerative colitis in homo sapiens child united states of america feces )	2018-11-22	v4	1 / 110	approved	No
410	amnon	lower in feces compared to rectal biopsies in children with treatment naive uc ( high in rectum biopsy biopsy site compared to feces in homo sapiens child united states of america ulcerative colitis )	2018-11-22	v4	1 / 118	approved	No
410	amnon	higher in feces compared to rectal biopsies in children with treatment naive uc ( high in feces compared to biopsy rectum biopsy site in homo sapiens child united states of america ulcerative colitis )	2018-11-22	v4	1 / 126	approved	No

Problems / suggestions? Please visit the dbBact forum