dbBact

This is the development server

Experiment ID: 41

Field	Description
name	amplicon sequencing of mice colonic microbiota
name	chronic psychological stress disrupted the composition of the murine colonic microbiota and accelerated a murine model of inflammatory bowel disease
sra	drp003050
sra	prjdb4266
datamd5	cd5207ab04e71db08b88eee1ac325196
mapmd5	815c0897be67858bcc1914fba0584f65

Annotations for experiment:

term enrichment score

Term	Score
tcr-alpha knockout	0.500000
stress	0.222222
LOWER IN stress	0.222222
japan	0.041667
mus musculus	0.013699
research facility	0.005236
LOWER IN control	0.004535
control	0.004435
feces	0.002294

Fraction of dbbact annotations with this term covered by the query

Term	Score
tcr-alpha knockout	0.333333
stress	0.142857
LOWER IN stress	0.142857
japan	0.021277
mus musculus	0.006897
research facility	0.002625
LOWER IN control	0.002278
control	0.002227
feces	0.001148

Fraction of annotations for the query sequences containing the term

Term	Score
mus musculus	1.000000
research facility	1.000000
feces	1.000000
tcr-alpha knockout	1.000000
japan	1.000000
stress	0.500000
LOWER IN control	0.500000
control	0.500000
LOWER IN stress	0.500000

Number of experiments associating the term to the sequence

Term	Score
mus musculus	1.000000
research facility	1.000000
feces	1.000000
tcr-alpha knockout	1.000000
stress	1.000000
LOWER IN control	1.000000
japan	1.000000
control	1.000000
LOWER IN stress	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
41	amnon	lower in water stress compared to control in tcr-b deficient mice ( high in control compared to stress in mus musculus research facility feces tcr-alpha knockout japan )	2016-12-10	v4	1 / 2	approved	No
41	amnon	higher in water stress compared to control in tcr-b deficient mouse ( high in stress compared to control in mus musculus research facility feces tcr-alpha knockout japan )	2016-12-10	v4	1 / 3	approved	No

Problems / suggestions? Please visit the dbBact forum