Experiment ID: 389

Field Description
namedevelopment of the tonsillar microbiome in pigs from newborn through weaning
srasrp110992
datamd53b7dee360ed4a1833989fa8a3c74225d
mapmd5153ba489dc300bd25f3ed84a99085750

Annotations for experiment:

term enrichment score
TermScore
age 1-3 weeks0.260870
age 8 hours0.200000
nipple0.166667
tonsil0.138889
LOWER IN age 1-3 weeks0.117647
age 4 weeks0.113208
state of michigan0.111111
LOWER IN age 4 weeks0.105263
pig0.058824
sus scrofa0.058824
vagina0.052632
farm0.023256
skin0.021739
adult0.004061
united states of america0.003333
Fraction of dbbact annotations with this term covered by the query
TermScore
age 1-3 weeks0.333333
LOWER IN age 1-3 weeks0.333333
age 8 hours0.333333
LOWER IN age 4 weeks0.200000
nipple0.200000
tonsil0.076923
age 4 weeks0.076923
state of michigan0.058824
vagina0.032258
pig0.030303
sus scrofa0.030303
farm0.011765
skin0.011765
adult0.002045
united states of america0.001669
Fraction of annotations for the query sequences containing the term
TermScore
pig1.000000
sus scrofa1.000000
united states of america1.000000
state of michigan1.000000
farm1.000000
tonsil0.714286
adult0.285714
age 1-3 weeks0.214286
age 4 weeks0.214286
skin0.142857
nipple0.142857
vagina0.142857
age 8 hours0.142857
LOWER IN age 4 weeks0.071429
LOWER IN age 1-3 weeks0.071429
Number of experiments associating the term to the sequence
TermScore
pig1.000000
sus scrofa1.000000
united states of america1.000000
state of michigan1.000000
farm1.000000
tonsil1.000000
age 1-3 weeks1.000000
LOWER IN age 4 weeks1.000000
age 4 weeks1.000000
LOWER IN age 1-3 weeks1.000000
skin1.000000
nipple1.000000
adult1.000000
vagina1.000000
age 8 hours1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v41 / 11approvedNo
389amnondominant pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v41 / 13approvedNo
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v41 / 14approvedNo
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v41 / 17approvedNo
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v41 / 17approvedNo
389amnondominant pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v41 / 17approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 8 hours2018-11-04v41 / 22approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, adult, tonsil2018-11-04v41 / 41approvedNo
389amnoncommon pig, sus scrofa, vagina, united states of america, state of michigan, farm2018-11-04v41 / 43approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 4 weeks2018-11-04v41 / 71approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, skin, nipple, adult2018-11-04v41 / 72approvedNo
389amnoncommon pig, sus scrofa, united states of america, state of michigan, farm, tonsil, age 1-3 weeks2018-11-04v41 / 80approvedNo
389amnon high in age 4 weeks compared to age 1-3 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v41 / 168approvedNo
389amnon high in age 1-3 weeks compared to age 4 weeks in pig sus scrofa united states of america state of michigan farm tonsil 2018-11-04v41 / 189approvedNo

Problems / suggestions? Please visit the dbBact forum