Experiment ID: 379

Field Description
namethe effect of the timing of exposure to campylobacter jejuni on the gut microbiome and inflammatory responses of broiler chickens
sraprjna380214
srasrp133552
datamd52f5831dea5410d1ce7efaacfe86e3348
mapmd53e108dca95e57f4a7d212edf11d84c84

Annotations for experiment:

term enrichment score
TermScore
age 15 - 35 days0.333333
campylobacter0.333333
LOWER IN campylobacter0.333333
old age0.133333
LOWER IN young age0.133333
LOWER IN age0.133333
united kingdom0.117647
young age0.117647
LOWER IN old age0.117647
chicken0.090909
gallus gallus0.086957
age0.068966
LOWER IN control0.009091
control0.008889
feces0.004608
Fraction of dbbact annotations with this term covered by the query
TermScore
age 15 - 35 days0.500000
campylobacter0.500000
LOWER IN campylobacter0.500000
old age0.142857
LOWER IN young age0.142857
LOWER IN age0.142857
young age0.111111
LOWER IN old age0.111111
united kingdom0.062500
age0.047619
chicken0.047619
gallus gallus0.045455
LOWER IN control0.004630
control0.004525
feces0.002309
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
gallus gallus1.000000
chicken1.000000
united kingdom1.000000
age 15 - 35 days0.250000
campylobacter0.250000
LOWER IN control0.250000
control0.250000
LOWER IN campylobacter0.250000
age0.125000
old age0.125000
LOWER IN young age0.125000
young age0.125000
LOWER IN age0.125000
LOWER IN old age0.125000
Number of experiments associating the term to the sequence
TermScore
age1.000000
old age1.000000
LOWER IN young age1.000000
feces1.000000
gallus gallus1.000000
chicken1.000000
united kingdom1.000000
age 15 - 35 days1.000000
campylobacter1.000000
LOWER IN control1.000000
young age1.000000
LOWER IN age1.000000
LOWER IN old age1.000000
control1.000000
LOWER IN campylobacter1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
379amnonhigher in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in campylobacter compared to control in feces gallus gallus chicken united kingdom )2018-09-14v41 / 2approvedNo
379amnonlower in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in control compared to campylobacter in feces gallus gallus chicken united kingdom )2018-09-14v41 / 15approvedNo
379amnondominant feces, gallus gallus, chicken, age 15 - 35 days, united kingdom2018-09-14v41 / 25approvedNo
379amnonlower in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in control compared to campylobacter in feces gallus gallus chicken united kingdom )2018-09-14v41 / 33approvedNo
379amnonnegatively correlated with age 8-35 days in chickens ( high in young age compared to age old age in feces gallus gallus chicken united kingdom )2018-09-14v41 / 47approvedNo
379amnonhigher in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in campylobacter compared to control in feces gallus gallus chicken united kingdom )2018-09-14v41 / 69approvedNo
379amnoncommon feces, gallus gallus, chicken, age 15 - 35 days, united kingdom2018-09-14v41 / 160approvedNo
379amnonpositively correlated with age 8-35 days in chickens ( high in age old age compared to young age in feces gallus gallus chicken united kingdom )2018-09-14v41 / 271approvedNo

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