Experiment ID: 379

Field Description
namethe effect of the timing of exposure to campylobacter jejuni on the gut microbiome and inflammatory responses of broiler chickens
sraprjna380214
srasrp133552
datamd52f5831dea5410d1ce7efaacfe86e3348
mapmd53e108dca95e57f4a7d212edf11d84c84

Annotations for experiment:

term enrichment score
TermScore
age 15 - 35 days0.285714
campylobacter0.285714
LOWER IN campylobacter0.285714
old age0.095238
LOWER IN young age0.095238
LOWER IN age0.095238
young age0.080000
LOWER IN old age0.080000
united kingdom0.062500
chicken0.047619
gallus gallus0.045455
age0.040816
LOWER IN control0.004515
control0.004415
feces0.002294
Fraction of dbbact annotations with this term covered by the query
TermScore
age 15 - 35 days0.333333
campylobacter0.333333
LOWER IN campylobacter0.333333
old age0.076923
LOWER IN young age0.076923
LOWER IN age0.076923
young age0.058824
LOWER IN old age0.058824
united kingdom0.032258
chicken0.024390
age0.024390
gallus gallus0.023256
LOWER IN control0.002278
control0.002227
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
gallus gallus1.000000
chicken1.000000
feces1.000000
united kingdom1.000000
age 15 - 35 days0.250000
campylobacter0.250000
LOWER IN control0.250000
control0.250000
LOWER IN campylobacter0.250000
age0.125000
old age0.125000
LOWER IN young age0.125000
young age0.125000
LOWER IN age0.125000
LOWER IN old age0.125000
Number of experiments associating the term to the sequence
TermScore
gallus gallus1.000000
chicken1.000000
feces1.000000
age1.000000
old age1.000000
LOWER IN young age1.000000
united kingdom1.000000
age 15 - 35 days1.000000
campylobacter1.000000
LOWER IN control1.000000
young age1.000000
LOWER IN age1.000000
LOWER IN old age1.000000
control1.000000
LOWER IN campylobacter1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
379amnonhigher in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in campylobacter compared to control in feces gallus gallus chicken united kingdom )2018-09-14v41 / 2approvedNo
379amnonlower in chickens infeceted with campylobacter at age 20 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v41 / 15approvedNo
379amnondominant gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v41 / 25approvedNo
379amnonlower in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in control compared to campylobacter in gallus gallus chicken feces united kingdom )2018-09-14v41 / 33approvedNo
379amnonnegatively correlated with age 8-35 days in chickens ( high in young age compared to age old age in gallus gallus chicken feces united kingdom )2018-09-14v41 / 47approvedNo
379amnonhigher in chickens infeceted with campylobacter at age 6 days compared to noninfected controls ( high in campylobacter compared to control in gallus gallus chicken feces united kingdom )2018-09-14v41 / 69approvedNo
379amnoncommon gallus gallus, chicken, feces, age 15 - 35 days, united kingdom2018-09-14v41 / 160approvedNo
379amnonpositively correlated with age 8-35 days in chickens ( high in age old age compared to young age in gallus gallus chicken feces united kingdom )2018-09-14v41 / 271approvedNo

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