Experiment ID: 378

Field Description
namedo different probing depths exhibit striking differences in microbial profiles?
sraprjna324274
datamd53fffaad567f6e07ad22c849efdc6bbcb
mapmd560f24a28225ca71549db130794768eb9

Annotations for experiment:

term enrichment score
TermScore
shallow pocket depth0.500000
depth < 3mm0.500000
depth > 3mm0.375000
deep pocket depth0.375000
LOWER IN shallow pocket depth0.166667
LOWER IN depth &lt; 3mm0.166667
LOWER IN depth &gt; 3mm0.166667
LOWER IN deep pocket depth0.166667
periodontitis0.114754
subgingival plaque0.100000
LOWER IN periodontitis0.090909
brazil0.076923
mouth0.076923
dentition0.074074
control0.008759
LOWER IN control0.008696
adult0.008130
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
shallow pocket depth0.500000
depth < 3mm0.500000
depth > 3mm0.500000
deep pocket depth0.500000
LOWER IN shallow pocket depth0.500000
LOWER IN depth &lt; 3mm0.500000
LOWER IN depth &gt; 3mm0.500000
LOWER IN deep pocket depth0.500000
LOWER IN periodontitis0.083333
periodontitis0.062500
subgingival plaque0.052632
brazil0.040000
mouth0.040000
dentition0.038462
LOWER IN control0.004545
control0.004444
adult0.004082
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
brazil1.000000
subgingival plaque1.000000
dentition1.000000
adult1.000000
mouth1.000000
periodontitis0.700000
shallow pocket depth0.500000
depth < 3mm0.500000
depth > 3mm0.300000
deep pocket depth0.300000
control0.300000
LOWER IN shallow pocket depth0.100000
LOWER IN depth &lt; 3mm0.100000
LOWER IN depth &gt; 3mm0.100000
LOWER IN deep pocket depth0.100000
LOWER IN periodontitis0.100000
LOWER IN control0.100000
Number of experiments associating the term to the sequence
TermScore
homo sapiens1.000000
brazil1.000000
subgingival plaque1.000000
dentition1.000000
adult1.000000
shallow pocket depth1.000000
depth < 3mm1.000000
periodontitis1.000000
mouth1.000000
depth > 3mm1.000000
deep pocket depth1.000000
control1.000000
LOWER IN shallow pocket depth1.000000
LOWER IN depth &lt; 3mm1.000000
LOWER IN depth &gt; 3mm1.000000
LOWER IN deep pocket depth1.000000
LOWER IN periodontitis1.000000
LOWER IN control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
378amnon high in periodontitis compared to control in homo sapiens brazil subgingival plaque dentition adult mouth 2018-09-14v41 / 7approvedNo
378amnon high in control compared to periodontitis in homo sapiens brazil subgingival plaque dentition adult mouth 2018-09-14v41 / 10approvedNo
378amnondominant homo sapiens, brazil, subgingival plaque, dentition, adult, shallow pocket depth, depth < 3mm, control, mouth2018-09-14v41 / 15approvedNo
378amnondominant homo sapiens, brazil, subgingival plaque, dentition, adult, shallow pocket depth, depth < 3mm, periodontitis, mouth2018-09-14v41 / 22approvedNo
378amnondominant homo sapiens, brazil, subgingival plaque, dentition, adult, depth > 3mm, deep pocket depth, periodontitis, mouth2018-09-14v41 / 24approvedNo
378amnon high in depth < 3mm shallow pocket depth compared to depth > 3mm deep pocket depth in homo sapiens brazil subgingival plaque dentition adult periodontitis mouth 2018-09-13v41 / 28approvedNo
378amnon high in deep pocket depth depth > 3mm compared to shallow pocket depth depth < 3mm in homo sapiens brazil subgingival plaque dentition adult periodontitis mouth 2018-09-13v41 / 40approvedNo
378amnoncommon homo sapiens, brazil, subgingival plaque, dentition, adult, shallow pocket depth, depth < 3mm, control, mouth2018-09-14v41 / 69approvedNo
378amnoncommon homo sapiens, brazil, subgingival plaque, dentition, adult, depth > 3mm, deep pocket depth, periodontitis, mouth2018-09-14v41 / 80approvedNo
378amnoncommon homo sapiens, brazil, subgingival plaque, dentition, adult, shallow pocket depth, depth < 3mm, periodontitis, mouth2018-09-14v41 / 84approvedNo

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