dbBact

This is the development server

Experiment ID: 325

Field	Description
name	microbiota-accessible carbohydrates suppress clostridium difficile infection in a murine model
qiita	11349
datamd5	c8553e518c3c5cd00dbb84c38f4545a4
mapmd5	c39ddc75afd7561e2ae445853025eb5d

Annotations for experiment:

term enrichment score

Term	Score
humanized mouse	0.444444
inulin	0.400000
clostridium difficile	0.333333
clostridium difficile colitis	0.285714
clostridium difficile intestinal infectious disease	0.222222
pathogen	0.111111
LOWER IN mouse chow	0.100000
diet	0.074074
research facility	0.010444
LOWER IN control	0.009132
united states of america	0.006678
feces	0.004603

Fraction of dbbact annotations with this term covered by the query

Term	Score
inulin	0.500000
humanized mouse	0.333333
clostridium difficile	0.333333
clostridium difficile colitis	0.250000
clostridium difficile intestinal infectious disease	0.166667
pathogen	0.066667
LOWER IN mouse chow	0.058824
diet	0.041667
research facility	0.005263
LOWER IN control	0.004630
united states of america	0.003356
feces	0.002309

Fraction of annotations for the query sequences containing the term

Term	Score
feces	0.666667
united states of america	0.666667
research facility	0.666667
humanized mouse	0.666667
clostridium difficile colitis	0.333333
clostridium difficile intestinal infectious disease	0.333333
LOWER IN control	0.333333
pathogen	0.333333
clostridium difficile	0.333333
diet	0.333333
inulin	0.333333
LOWER IN mouse chow	0.333333

Number of experiments associating the term to the sequence

Term	Score
clostridium difficile colitis	1.000000
clostridium difficile intestinal infectious disease	1.000000
LOWER IN control	1.000000
feces	1.000000
united states of america	1.000000
research facility	1.000000
humanized mouse	1.000000
pathogen	1.000000
clostridium difficile	1.000000
diet	1.000000
inulin	1.000000
LOWER IN mouse chow	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
325	amnon	clostridium difficile pathogen (other pathogen, clostridium difficile)	2018-04-29	v4	1 / 1	approved	No
325	amnon	higher in mice supplemented with inulin in diet compared to normal diet ( high in diet inulin compared to mouse chow in feces united states of america research facility humanized mouse )	2018-04-29	v4	1 / 1	approved	No
325	amnon	higher in c. diff infeceted humanized mice compared to non-infected controls ( high in clostridium difficile colitis clostridium difficile intestinal infectious disease compared to control in feces united states of america research facility humanized mouse )	2018-04-29	v4	1 / 4	approved	No

Problems / suggestions? Please visit the dbBact forum