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Experiment ID: 325

Field	Description
name	microbiota-accessible carbohydrates suppress clostridium difficile infection in a murine model
qiita	11349
datamd5	c8553e518c3c5cd00dbb84c38f4545a4
mapmd5	c39ddc75afd7561e2ae445853025eb5d

Annotations for experiment:

term enrichment score

Term	Score
inulin	0.333333
humanized mouse	0.307692
clostridium difficile	0.250000
clostridium difficile colitis	0.200000
clostridium difficile intestinal infectious disease	0.142857
pathogen	0.062500
LOWER IN mouse chow	0.055556
diet	0.040000
research facility	0.005229
LOWER IN control	0.004525
united states of america	0.003331
feces	0.002292

Fraction of dbbact annotations with this term covered by the query

Term	Score
inulin	0.333333
humanized mouse	0.200000
clostridium difficile	0.200000
clostridium difficile colitis	0.142857
clostridium difficile intestinal infectious disease	0.090909
pathogen	0.034483
LOWER IN mouse chow	0.030303
diet	0.021277
research facility	0.002625
LOWER IN control	0.002278
united states of america	0.001669
feces	0.001148

Fraction of annotations for the query sequences containing the term

Term	Score
humanized mouse	0.666667
feces	0.666667
united states of america	0.666667
research facility	0.666667
clostridium difficile intestinal infectious disease	0.333333
clostridium difficile colitis	0.333333
LOWER IN control	0.333333
pathogen	0.333333
clostridium difficile	0.333333
diet	0.333333
inulin	0.333333
LOWER IN mouse chow	0.333333

Number of experiments associating the term to the sequence

Term	Score
humanized mouse	1.000000
feces	1.000000
united states of america	1.000000
research facility	1.000000
clostridium difficile intestinal infectious disease	1.000000
clostridium difficile colitis	1.000000
LOWER IN control	1.000000
pathogen	1.000000
clostridium difficile	1.000000
diet	1.000000
inulin	1.000000
LOWER IN mouse chow	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
325	amnon	clostridium difficile pathogen (other pathogen, clostridium difficile)	2018-04-29	v4	1 / 1	approved	No
325	amnon	higher in mice supplemented with inulin in diet compared to normal diet ( high in diet inulin compared to mouse chow in humanized mouse feces united states of america research facility )	2018-04-29	v4	1 / 1	approved	No
325	amnon	higher in c. diff infeceted humanized mice compared to non-infected controls ( high in clostridium difficile intestinal infectious disease clostridium difficile colitis compared to control in humanized mouse feces united states of america research facility )	2018-04-29	v4	1 / 4	approved	No

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