Experiment ID: 311

Field Description
namethe impact of vegan production on the kimchi microbiome
sraprjna418790
datamd5069ad5dbf75cac139b09c6d0eac59605
mapmd58d49d8a4fa008cf4c6b0fce96677f172

Annotations for experiment:

term enrichment score
TermScore
state of rhode island0.325301
kimchi0.212121
foodon product type0.182857
cabbage0.150000
red pepper0.150000
onion0.150000
allium cepa0.130435
garlic0.115385
food (fermented)0.108434
food processing factory0.108108
ginger0.108108
scallion0.108108
miso food product0.108108
floor0.097561
fish sauce0.097561
radish0.097561
LOWER IN day 00.097561
chloroplast0.065574
LOWER IN days 1-90.058824
days 1-90.058824
vegan kimchi0.058824
vegan0.058824
LOWER IN non vegan kimchi0.058824
LOWER IN non vegan0.058824
LOWER IN day 30.058824
non vegan0.058824
non vegan kimchi0.058824
LOWER IN vegan0.058824
LOWER IN vegan kimchi0.058824
day 00.055556
days 1-20.055556
brassica0.052632
mitochondrion0.047059
late timepoints0.045455
LOWER IN early timepoints0.045455
early timepoints0.041667
united states of america0.003333
Fraction of dbbact annotations with this term covered by the query
TermScore
food processing factory0.333333
ginger0.333333
scallion0.333333
cabbage0.333333
red pepper0.333333
LOWER IN days 1-90.333333
onion0.333333
miso food product0.333333
days 1-90.333333
vegan kimchi0.333333
vegan0.333333
LOWER IN non vegan kimchi0.333333
LOWER IN non vegan0.333333
LOWER IN day 30.333333
non vegan0.333333
non vegan kimchi0.333333
LOWER IN vegan0.333333
LOWER IN vegan kimchi0.333333
state of rhode island0.200000
floor0.200000
fish sauce0.200000
kimchi0.200000
day 00.200000
radish0.200000
allium cepa0.200000
LOWER IN day 00.200000
days 1-20.200000
garlic0.142857
brassica0.142857
foodon product type0.111111
late timepoints0.076923
LOWER IN early timepoints0.076923
food (fermented)0.066667
chloroplast0.066667
early timepoints0.058824
mitochondrion0.037037
united states of america0.001669
Fraction of annotations for the query sequences containing the term
TermScore
united states of america0.870968
state of rhode island0.870968
foodon product type0.516129
food (fermented)0.290323
kimchi0.225806
cabbage0.096774
red pepper0.096774
garlic0.096774
allium cepa0.096774
onion0.096774
floor0.064516
food processing factory0.064516
ginger0.064516
scallion0.064516
fish sauce0.064516
radish0.064516
miso food product0.064516
LOWER IN day 00.064516
mitochondrion0.064516
chloroplast0.064516
day 00.032258
early timepoints0.032258
LOWER IN days 1-90.032258
late timepoints0.032258
days 1-90.032258
LOWER IN early timepoints0.032258
vegan kimchi0.032258
vegan0.032258
LOWER IN non vegan kimchi0.032258
LOWER IN non vegan0.032258
days 1-20.032258
LOWER IN day 30.032258
non vegan0.032258
non vegan kimchi0.032258
LOWER IN vegan0.032258
LOWER IN vegan kimchi0.032258
brassica0.032258
Number of experiments associating the term to the sequence
TermScore
united states of america1.000000
state of rhode island1.000000
floor1.000000
food processing factory1.000000
ginger1.000000
foodon product type1.000000
scallion1.000000
cabbage1.000000
fish sauce1.000000
red pepper1.000000
kimchi1.000000
day 01.000000
early timepoints1.000000
LOWER IN days 1-91.000000
food (fermented)1.000000
radish1.000000
garlic1.000000
allium cepa1.000000
onion1.000000
miso food product1.000000
late timepoints1.000000
days 1-91.000000
LOWER IN day 01.000000
LOWER IN early timepoints1.000000
vegan kimchi1.000000
vegan1.000000
LOWER IN non vegan kimchi1.000000
LOWER IN non vegan1.000000
mitochondrion1.000000
chloroplast1.000000
days 1-21.000000
LOWER IN day 31.000000
non vegan1.000000
non vegan kimchi1.000000
LOWER IN vegan1.000000
LOWER IN vegan kimchi1.000000
brassica1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
311amnongarlic chloroplast (other chloroplast, garlic)2018-04-09v41 / 1approvedNo
311amnonhighest in days 1-2 (middle) in kimchi fermentation ( high in days 1-2 compared to day 0 day 3 in united states of america state of rhode island kimchi food (fermented) )2018-04-09v41 / 1approvedNo
311amnonlower in vegan compared to non-vegan kimchi ( high in non vegan non vegan kimchi compared to vegan vegan kimchi in united states of america state of rhode island kimchi food (fermented) )2018-04-09v41 / 1approvedNo
311amnoncabbage mitochondrial dna (other mitochondrion, brassica, cabbage)2018-04-08v41 / 1approvedNo
311amnonred pepper chloroplast (other red pepper, chloroplast)2018-04-09v41 / 1approvedNo
311amnonhigher in vegan compared to non-vegan kimchi ( high in vegan kimchi vegan compared to non vegan kimchi non vegan in united states of america state of rhode island kimchi food (fermented) )2018-04-09v41 / 2approvedNo
311amnononion mitochondrial dna (other allium cepa, onion, mitochondrion)2018-04-08v41 / 2approvedNo
311amnondominant united states of america, state of rhode island, radish, foodon product type2018-04-09v41 / 3approvedNo
311amnondominant united states of america, state of rhode island, kimchi, food (fermented)2018-04-09v41 / 3approvedNo
311amnondominant united states of america, state of rhode island, miso food product, food (fermented)2018-04-09v41 / 3approvedNo
311amnondominant ginger, united states of america, state of rhode island, foodon product type2018-04-09v41 / 4approvedNo
311amnondominant united states of america, state of rhode island, red pepper, foodon product type2018-04-09v41 / 4approvedNo
311amnondominant united states of america, state of rhode island, allium cepa, onion, foodon product type2018-04-09v41 / 4approvedNo
311amnonhigher in fermneted kimchi days>1 compared to day 0 ( high in late timepoints days 1-9 compared to day 0 early timepoints in united states of america state of rhode island kimchi food (fermented) )2018-04-09v41 / 6approvedNo
311amnonhigh freq. in salted cabbage (dominant cabbage, united states of america, state of rhode island, foodon product type)2018-04-09v41 / 6approvedNo
311amnondominant united states of america, state of rhode island, garlic, foodon product type2018-04-09v41 / 6approvedNo
311amnonhigh freq. in floor of kimchi production facility (dominant united states of america, state of rhode island, floor, food processing factory)2018-04-09v41 / 10approvedNo
311amnondominant united states of america, state of rhode island, fish sauce, foodon product type2018-04-09v41 / 11approvedNo
311amnondominant united states of america, state of rhode island, scallion, foodon product type2018-04-09v41 / 14approvedNo
311amnoncommon united states of america, state of rhode island, kimchi, food (fermented)2018-04-09v41 / 17approvedNo
311amnoncommon united states of america, state of rhode island, miso food product, food (fermented)2018-04-09v41 / 22approvedNo
311amnoncommon united states of america, state of rhode island, allium cepa, onion, foodon product type2018-04-09v41 / 26approvedNo
311amnoncommon united states of america, state of rhode island, garlic, foodon product type2018-04-09v41 / 34approvedNo
311amnoncommon united states of america, state of rhode island, radish, foodon product type2018-04-09v41 / 36approvedNo
311amnonlower in fermneted kimchi days>1 compared to day 0 ( high in day 0 early timepoints compared to days 1-9 in united states of america state of rhode island kimchi food (fermented) )2018-04-09v41 / 62approvedNo
311amnoncommon united states of america, state of rhode island, red pepper, foodon product type2018-04-09v41 / 63approvedNo
311amnoncommon united states of america, state of rhode island, fish sauce, foodon product type2018-04-09v41 / 68approvedNo
311amnoncommon in salted cabbage (common cabbage, united states of america, state of rhode island, foodon product type)2018-04-09v41 / 85approvedNo
311amnoncommon united states of america, state of rhode island, scallion, foodon product type2018-04-09v41 / 121approvedNo
311amnoncommon ginger, united states of america, state of rhode island, foodon product type2018-04-09v41 / 180approvedNo
311amnoncommon in floor of kimchi production facility (common united states of america, state of rhode island, floor, food processing factory)2018-04-09v41 / 324approvedNo

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