dbBact

This is the development server

Experiment ID: 288

Field	Description
name	characterization of the juvenile green turtle (chelonia mydas) microbiome throughout an ontogenetic shift from pelagic to neritic habitats
sra	srp080996
datamd5	3e19c0e42cfb5afecb71afd8531a1052
mapmd5	8dc0a3394dc6c7298d9e921e852d4403

Annotations for experiment:

term enrichment score

Term	Score
gulf of mexico	0.666667
pelagic zone	0.500000
green turtle	0.500000
chelonia mydas	0.500000
neritic zone	0.500000
LOWER IN pelagic zone	0.250000
LOWER IN neritic zone	0.250000
cloaca	0.181818

Fraction of dbbact annotations with this term covered by the query

Term	Score
pelagic zone	0.500000
gulf of mexico	0.500000
neritic zone	0.500000
LOWER IN pelagic zone	0.500000
LOWER IN neritic zone	0.500000
green turtle	0.333333
chelonia mydas	0.333333
cloaca	0.100000

Fraction of annotations for the query sequences containing the term

Term	Score
cloaca	1.000000
gulf of mexico	1.000000
green turtle	1.000000
chelonia mydas	1.000000
pelagic zone	0.500000
summer	0.500000
neritic zone	0.500000
autumn	0.500000
LOWER IN pelagic zone	0.166667
LOWER IN summer	0.166667
LOWER IN neritic zone	0.166667
LOWER IN autumn	0.166667

Number of experiments associating the term to the sequence

Term	Score
pelagic zone	1.000000
cloaca	1.000000
gulf of mexico	1.000000
summer	1.000000
green turtle	1.000000
chelonia mydas	1.000000
neritic zone	1.000000
autumn	1.000000
LOWER IN pelagic zone	1.000000
LOWER IN summer	1.000000
LOWER IN neritic zone	1.000000
LOWER IN autumn	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
288	amnon	dominant neritic zone, cloaca, gulf of mexico, autumn, green turtle, chelonia mydas	2018-01-29	v4	1 / 18	approved	No
288	amnon	dominant pelagic zone, cloaca, gulf of mexico, summer, green turtle, chelonia mydas	2018-01-29	v4	1 / 24	approved	No
288	amnon	high in pelagic zone summer compared to neritic zone autumn in cloaca gulf of mexico green turtle chelonia mydas	2018-01-29	v4	1 / 44	approved	No
288	amnon	high in neritic zone autumn compared to pelagic zone summer in cloaca gulf of mexico green turtle chelonia mydas	2018-01-29	v4	1 / 54	approved	No
288	amnon	common neritic zone, cloaca, gulf of mexico, autumn, green turtle, chelonia mydas	2018-01-29	v4	1 / 132	approved	No
288	amnon	common pelagic zone, cloaca, gulf of mexico, summer, green turtle, chelonia mydas	2018-01-29	v4	1 / 135	approved	No

Problems / suggestions? Please visit the dbBact forum