dbBact

This is the development server

Experiment ID: 276

Field	Description
name	subsistence strategies in traditional societies distinguish gut microbiomes
qiita	1448
datamd5	6686140aef0063cbe0e59ff83b7737ac
mapmd5	9159c962d14309371f3b628f9d5c8bbd

Annotations for experiment:

term enrichment score

Term	Score
tunapuco	0.500000
small village	0.333333
state of oklahoma	0.333333
peru	0.250000
LOWER IN state of oklahoma	0.250000
LOWER IN peru	0.250000
LOWER IN tunapuco	0.250000
LOWER IN small village	0.200000
LOWER IN rural community	0.142857
LOWER IN city	0.125000
LOWER IN united states of america	0.111111
rural community	0.105263
city	0.076923
adult	0.008130
united states of america	0.006623
homo sapiens	0.005168
feces	0.004577

Fraction of dbbact annotations with this term covered by the query

Term	Score
tunapuco	0.500000
LOWER IN state of oklahoma	0.500000
LOWER IN peru	0.500000
LOWER IN tunapuco	0.500000
small village	0.250000
state of oklahoma	0.250000
LOWER IN small village	0.250000
peru	0.166667
LOWER IN rural community	0.125000
LOWER IN city	0.100000
LOWER IN united states of america	0.083333
rural community	0.058824
city	0.041667
adult	0.004082
united states of america	0.003333
homo sapiens	0.002591
feces	0.002294

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
adult	1.000000
peru	0.500000
small village	0.500000
tunapuco	0.500000
rural community	0.500000
united states of america	0.500000
city	0.500000
state of oklahoma	0.500000
LOWER IN united states of america	0.166667
LOWER IN city	0.166667
LOWER IN state of oklahoma	0.166667
LOWER IN peru	0.166667
LOWER IN small village	0.166667
LOWER IN tunapuco	0.166667
LOWER IN rural community	0.166667

Number of experiments associating the term to the sequence

Term	Score
peru	1.000000
small village	1.000000
tunapuco	1.000000
rural community	1.000000
LOWER IN united states of america	1.000000
LOWER IN city	1.000000
LOWER IN state of oklahoma	1.000000
feces	1.000000
homo sapiens	1.000000
adult	1.000000
united states of america	1.000000
city	1.000000
state of oklahoma	1.000000
LOWER IN peru	1.000000
LOWER IN small village	1.000000
LOWER IN tunapuco	1.000000
LOWER IN rural community	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
276	amnon	dominant feces, homo sapiens, united states of america, city, adult, state of oklahoma	2018-01-22	v4	1 / 15	approved	No
276	amnon	dominant feces, homo sapiens, adult, peru, small village, tunapuco, rural community	2018-01-22	v4	1 / 19	approved	No
276	amnon	common feces, homo sapiens, united states of america, city, adult, state of oklahoma	2018-01-22	v4	1 / 110	approved	No
276	amnon	high in united states of america city state of oklahoma compared to peru small village tunapuco rural community in feces homo sapiens adult	2018-01-22	v4	1 / 168	approved	No
276	amnon	common feces, homo sapiens, adult, peru, small village, tunapuco, rural community	2018-01-22	v4	1 / 263	approved	No
276	amnon	high in peru small village tunapuco rural community compared to united states of america city state of oklahoma in feces homo sapiens adult	2018-01-22	v4	1 / 469	approved	No

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