Experiment ID: 266

Field Description
namehost genotype and age shape the leaf and root microbiomes of a wild perennial plant
sra prjeb10570
datamd56cd1304dd6ebcca9f30d99cce455f5d7
mapmd504f9b105e713231cb2389d4dd6e0cb5a

Annotations for experiment:

term enrichment score
TermScore
brassicaceae0.406780
boechera stricta0.377358
state of idaho0.325203
ph 5.50.186047
ph 60.119403
plant0.118227
ph 6.50.097561
fungal cell0.076923
root0.061947
LOWER IN leaf0.055556
LOWER IN root0.045455
leaf0.039474
pathogen0.038462
soil0.009742
united states of america0.003333
Fraction of dbbact annotations with this term covered by the query
TermScore
brassicaceae0.333333
boechera stricta0.333333
fungal cell0.333333
state of idaho0.200000
ph 5.50.200000
ph 6.50.111111
ph 60.090909
LOWER IN leaf0.076923
plant0.066667
LOWER IN root0.047619
root0.034483
pathogen0.034483
leaf0.023256
soil0.004926
united states of america0.001669
Fraction of annotations for the query sequences containing the term
TermScore
united states of america0.869565
state of idaho0.869565
brassicaceae0.521739
plant0.521739
boechera stricta0.434783
soil0.434783
root0.304348
ph 5.50.173913
ph 60.173913
leaf0.130435
ph 6.50.086957
LOWER IN leaf0.043478
LOWER IN root0.043478
pathogen0.043478
fungal cell0.043478
Number of experiments associating the term to the sequence
TermScore
brassicaceae1.000000
boechera stricta1.000000
plant1.000000
united states of america1.000000
state of idaho1.000000
LOWER IN leaf1.000000
root1.000000
soil1.000000
ph 5.51.000000
ph 61.000000
leaf1.000000
LOWER IN root1.000000
ph 6.51.000000
pathogen1.000000
fungal cell1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
266amnonplant mitochondria (other plant, brassicaceae)2017-12-18v41 / 1approvedNo
266amnonbrassicaceae fungal pathogen (other pathogen, fungal cell)2017-12-18v41 / 5approvedNo
266amnonhigh freq. in soil from JAM garden (dominant soil, united states of america, state of idaho, ph 5.5)2017-12-18v41 / 6approvedNo
266amnonhigh freq. in roots in SIL garden (dominant brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 6approvedNo
266amnonhigh freq. in soil from MIL garden (dominant soil, united states of america, state of idaho, ph 6.5)2017-12-18v41 / 8approvedNo
266amnonhigh freq. in soil from PAR garden (dominant soil, united states of america, state of idaho, ph 5.5)2017-12-18v41 / 8approvedNo
266amnonplant DNA (other plant, brassicaceae)2017-12-18v41 / 8approvedNo
266amnonhigh freq. in soil from SIL garden (dominant soil, united states of america, state of idaho, ph 6)2017-12-18v41 / 8approvedNo
266amnonhigh freq. in soil from MAH garden (dominant soil, united states of america, state of idaho, ph 6)2017-12-18v41 / 11approvedNo
266amnonhigh freq. in roots in JAM garden (dominant brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 12approvedNo
266amnonhigh freq. in roots in MAH garden (dominant brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 12approvedNo
266amnonhigh freq. on perennial plant leaves (dominant brassicaceae, boechera stricta, plant, leaf, united states of america, state of idaho)2017-12-19v41 / 17approvedNo
266amnoncommon on perennial plant leaves (common brassicaceae, boechera stricta, plant, leaf, united states of america, state of idaho)2017-12-19v41 / 156approvedNo
266amnoncommon in roots in JAM garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 843approvedNo
266amnoncommon in soil from MIL garden (common soil, united states of america, state of idaho, ph 6.5)2017-12-18v41 / 980approvedNo
266amnoncommon in soil from PAR garden (common soil, united states of america, state of idaho, ph 5.5)2017-12-18v41 / 1032approvedNo
266amnoncommon in roots in MAH garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 1110approvedNo
266amnon high in leaf compared to root in brassicaceae boechera stricta plant united states of america state of idaho 2017-12-19v41 / 1175approvedNo
266amnonCommon in soil from MAH garden (common soil, united states of america, state of idaho, ph 6)2017-12-18v41 / 1299approvedNo
266amnoncommon in soil from SIL garden (common soil, united states of america, state of idaho, ph 6)2017-12-18v41 / 1389approvedNo
266amnoncoomon in roots in SIL garden (common brassicaceae, boechera stricta, plant, united states of america, state of idaho, root)2017-12-19v41 / 1399approvedNo
266amnoncommon in soil from JAM garden (common soil, united states of america, state of idaho, ph 5.5)2017-12-18v41 / 1456approvedNo
266amnon high in root compared to leaf in brassicaceae boechera stricta plant united states of america state of idaho 2017-12-19v41 / 5886approvedNo

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