dbBact

This is the development server

Experiment ID: 261

Field	Description
name	dietary energy drives the dynamic response of bovine rumen viral communities
sra	srp076028
datamd5	6c09efe600a60ffb95b66947da6082d9
mapmd5	c8b75aa96a6aff1abb2e5cd91129f4a4

Annotations for experiment:

term enrichment score

Term	Score
state of nebraska	0.400000
27cds diet	0.333333
55cs diet	0.333333
LOWER IN corn diet	0.333333
LOWER IN 40mdgs diet	0.333333
corn diet	0.333333
40mdgs diet	0.333333
LOWER IN 27cds diet	0.333333
LOWER IN 55cs diet	0.333333
cow	0.153846
bos taurus	0.100000
diet	0.076923
rumen	0.074074
united states of america	0.006689

Fraction of dbbact annotations with this term covered by the query

Term	Score
27cds diet	0.500000
55cs diet	0.500000
LOWER IN corn diet	0.500000
LOWER IN 40mdgs diet	0.500000
corn diet	0.500000
40mdgs diet	0.500000
LOWER IN 27cds diet	0.500000
LOWER IN 55cs diet	0.500000
state of nebraska	0.250000
cow	0.083333
bos taurus	0.052632
diet	0.041667
rumen	0.038462
united states of america	0.003356

Fraction of annotations for the query sequences containing the term

Term	Score
united states of america	1.000000
rumen	1.000000
bos taurus	1.000000
state of nebraska	1.000000
cow	1.000000
diet	0.500000
27cds diet	0.250000
55cs diet	0.250000
LOWER IN corn diet	0.250000
LOWER IN 40mdgs diet	0.250000
corn diet	0.250000
40mdgs diet	0.250000
LOWER IN 27cds diet	0.250000
LOWER IN 55cs diet	0.250000

Number of experiments associating the term to the sequence

Term	Score
united states of america	1.000000
rumen	1.000000
bos taurus	1.000000
state of nebraska	1.000000
cow	1.000000
diet	1.000000
27cds diet	1.000000
55cs diet	1.000000
LOWER IN corn diet	1.000000
LOWER IN 40mdgs diet	1.000000
corn diet	1.000000
40mdgs diet	1.000000
LOWER IN 27cds diet	1.000000
LOWER IN 55cs diet	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
261	amnon	dominant united states of america, rumen, bos taurus, state of nebraska, cow	2017-12-10	v4	1 / 19	approved	No
261	amnon	diet dependent in cow rumen ( high in diet corn diet 40mdgs diet compared to 27cds diet 55cs diet in united states of america rumen bos taurus state of nebraska cow )	2017-12-10	v4	1 / 83	approved	No
261	amnon	diet dependent in cow rumen ( high in diet 27cds diet 55cs diet compared to corn diet 40mdgs diet in united states of america rumen bos taurus state of nebraska cow )	2017-12-10	v4	1 / 113	approved	No
261	amnon	common united states of america, rumen, bos taurus, state of nebraska, cow	2017-12-10	v4	1 / 266	approved	No

Problems / suggestions? Please visit the dbBact forum