dbBact

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Experiment ID: 260

Field	Description
name	subgingival microbiome colonization and cytokine production during early dental implant healing
sra	srp124857
sra	prjna417321
datamd5	6843a0d83dfdd1ea17995df15111aa1b
mapmd5	3de5cee2deda0ddf63340d4efff81892

Annotations for experiment:

term enrichment score

Term	Score
state of nebraska	0.400000
natural tooth	0.400000
LOWER IN implant	0.400000
subgingival plaque	0.100000
mouth	0.076923
dentition	0.074074
united states of america	0.006645
homo sapiens	0.005168

Fraction of dbbact annotations with this term covered by the query

Term	Score
natural tooth	0.500000
LOWER IN implant	0.500000
state of nebraska	0.250000
subgingival plaque	0.052632
mouth	0.040000
dentition	0.038462
united states of america	0.003333
homo sapiens	0.002591

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
united states of america	1.000000
dentition	1.000000
state of nebraska	1.000000
subgingival plaque	1.000000
mouth	1.000000
natural tooth	0.333333
LOWER IN implant	0.333333

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
united states of america	1.000000
dentition	1.000000
state of nebraska	1.000000
subgingival plaque	1.000000
mouth	1.000000
natural tooth	1.000000
LOWER IN implant	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
260	amnon	higher in natiral tooth compared to dental implant ( high in natural tooth compared to implant in homo sapiens united states of america dentition state of nebraska subgingival plaque mouth )	2017-12-05	v4	1 / 4	approved	No
260	amnon	dominant homo sapiens, united states of america, dentition, state of nebraska, subgingival plaque, mouth	2017-12-05	v4	1 / 24	approved	No
260	amnon	common homo sapiens, united states of america, dentition, state of nebraska, subgingival plaque, mouth	2017-12-05	v4	1 / 59	approved	No

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