Experiment ID: 2586

Field Description
nameu.s. immigration westernizes the human gut microbiome (6498444) - gpt-5
proj_id6498444
sraprjeb28687
date_of_upload17/03/2026 22:20
doi10.1016/j.cell.2018.10.029
modelgpt-5
sample_groups_version18
dbbact_id400
dbbact_linkhttps://dbbact.org/exp_info/400
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
karen0.666667
hmong0.583333
urban biome0.368421
european0.266667
village0.240000
LOWER IN european0.222222
LOWER IN urban biome0.181818
LOWER IN village0.181818
LOWER IN hmong0.166667
thailand0.160920
LOWER IN thailand0.153846
female organism0.100000
LOWER IN united states of america0.090909
human adult stage0.045455
united states of america0.006635
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN urban biome1.000000
LOWER IN village1.000000
hmong0.500000
karen0.500000
LOWER IN hmong0.500000
LOWER IN thailand0.333333
LOWER IN european0.250000
urban biome0.250000
village0.200000
european0.200000
thailand0.090909
LOWER IN united states of america0.083333
female organism0.052632
human adult stage0.023256
united states of america0.003333
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
female organism1.000000
human adult stage1.000000
karen1.000000
feces1.000000
hmong0.700000
thailand0.700000
saint paul0.700000
united states of america0.700000
urban biome0.700000
european0.400000
pre-immigration0.400000
mae la subdistrict0.400000
refugee camp0.400000
village0.300000
chiang mai province0.300000
post-immigration0.300000
longitudinal cohort0.300000
LOWER IN european0.200000
LOWER IN pre-immigration0.200000
LOWER IN mae la subdistrict0.200000
LOWER IN refugee camp0.200000
LOWER IN saint paul0.100000
LOWER IN united states of america0.100000
LOWER IN urban biome0.100000
LOWER IN hmong0.100000
LOWER IN thailand0.100000
LOWER IN post-immigration0.100000
LOWER IN longitudinal cohort0.100000
LOWER IN village0.100000
LOWER IN chiang mai province0.100000
Number of experiments associating the term to the sequence
TermScore
village1.000000
chiang mai province1.000000
LOWER IN european1.000000
LOWER IN pre-immigration1.000000
LOWER IN mae la subdistrict1.000000
LOWER IN refugee camp1.000000
LOWER IN saint paul1.000000
LOWER IN united states of america1.000000
LOWER IN urban biome1.000000
homo sapiens1.000000
hmong1.000000
female organism1.000000
human adult stage1.000000
karen1.000000
feces1.000000
thailand1.000000
post-immigration1.000000
longitudinal cohort1.000000
LOWER IN hmong1.000000
LOWER IN thailand1.000000
saint paul1.000000
united states of america1.000000
urban biome1.000000
european1.000000
pre-immigration1.000000
mae la subdistrict1.000000
refugee camp1.000000
LOWER IN post-immigration1.000000
LOWER IN longitudinal cohort1.000000
LOWER IN village1.000000
LOWER IN chiang mai province1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2586gpt-5Thai-resident human gut (Hmong and Karen) samples (dominant homo sapiens, hmong, village, female organism, human adult stage, karen, chiang mai province, feces, thailand)2026-03-17v41 / 13pendingNo
2586gpt-5Thai-resident Karen refugee camp samples (Mae La, pre-immigration) + U.S.-resident human gut (Hmong, Karen, and European American) cross-sectional samples (dominant european, homo sapiens, hmong, pre-immigration, mae la subdistrict, refugee camp, female organism, human adult stage, saint paul, karen, united states of america, urban biome, feces, thailand)2026-03-17v41 / 17pendingNo
2586gpt-5Longitudinal Karen immigrant gut samples (monthly follow-up after U.S. arrival) (dominant longitudinal cohort, post-immigration, homo sapiens, female organism, human adult stage, saint paul, karen, united states of america, urban biome, feces)2026-03-17v41 / 19pendingNo
2586gpt-5Longitudinal Karen immigrant gut samples (monthly follow-up after U.S. arrival) (common longitudinal cohort, post-immigration, homo sapiens, female organism, human adult stage, saint paul, karen, united states of america, urban biome, feces)2026-03-17v41 / 92pendingNo
2586gpt-5Thai-resident Karen refugee camp samples (Mae La, pre-immigration) + U.S.-resident human gut (Hmong, Karen, and European American) cross-sectional samples (common european, homo sapiens, hmong, pre-immigration, mae la subdistrict, refugee camp, female organism, human adult stage, saint paul, karen, united states of america, urban biome, feces, thailand)2026-03-17v41 / 106pendingNo
2586gpt-5Thai-resident human gut (Hmong and Karen) samples (common homo sapiens, hmong, village, female organism, human adult stage, karen, chiang mai province, feces, thailand)2026-03-17v41 / 107pendingNo
2586gpt-5Thai-resident vs U.S.-resident gut microbiomes (cross-sectional) ( high in european pre-immigration mae la subdistrict refugee camp saint paul united states of america urban biome compared to village chiang mai province in homo sapiens hmong female organism human adult stage karen feces thailand )2026-03-17v41 / 223pendingNo
2586gpt-5Thai-resident baseline vs longitudinal post-immigration (migration-associated shift) ( high in european hmong pre-immigration mae la subdistrict refugee camp thailand compared to post-immigration longitudinal cohort in homo sapiens female organism human adult stage saint paul karen united states of america urban biome feces )2026-03-17v41 / 226pendingNo
2586gpt-5Thai-resident baseline vs longitudinal post-immigration (migration-associated shift) ( high in post-immigration longitudinal cohort compared to european hmong pre-immigration mae la subdistrict refugee camp thailand in homo sapiens female organism human adult stage saint paul karen united states of america urban biome feces )2026-03-17v41 / 373pendingNo
2586gpt-5Thai-resident vs U.S.-resident gut microbiomes (cross-sectional) ( high in village chiang mai province compared to european pre-immigration mae la subdistrict refugee camp saint paul united states of america urban biome in homo sapiens hmong female organism human adult stage karen feces thailand )2026-03-17v41 / 434pendingNo

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