Experiment ID: 2585

Field Description
nameeffects of aging on the skin and gill microbiota of farmed seabass and seabream (7934244) - gpt-5
proj_id7934244
sraprjna687505
date_of_upload17/03/2026 21:50
doi10.1186/s42523-020-00072-2
modelgpt-5
sample_groups_version18
dbbact_id782
dbbact_linkhttps://dbbact.org/exp_info/782
needs_manual_reviewtrue

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN skin of body1.000000
LOWER IN depth (water) 0-100cm1.000000
LOWER IN sparus aurata0.500000
LOWER IN dicentrarchus labrax0.500000
dicentrarchus labrax0.500000
sparus aurata0.500000
depth (water) 0-100cm0.333333
depth (water) 0cm0.333333
portuguese republic0.333333
skin of body0.333333
LOWER IN gill0.250000
fishpond0.250000
estuary0.250000
LOWER IN depth (water) 0cm0.250000
gill0.200000
LOWER IN surface water0.200000
fish farm0.166667
surface water0.058824
Fraction of annotations for the query sequences containing the term
TermScore
fishpond1.000000
brackish water body1.000000
portuguese republic1.000000
estuary1.000000
fish farm1.000000
finfish farming process1.000000
semi-intensive aquaculture1.000000
portimão1.000000
external mucosa0.733333
dicentrarchus labrax0.400000
sparus aurata0.400000
gill0.366667
skin of body0.366667
surface water0.266667
depth (water) 0-100cm0.266667
depth (water) 0cm0.266667
LOWER IN external mucosa0.200000
LOWER IN sparus aurata0.200000
LOWER IN dicentrarchus labrax0.200000
LOWER IN surface water0.200000
LOWER IN depth (water) 0-100cm0.200000
LOWER IN depth (water) 0cm0.200000
LOWER IN gill0.166667
LOWER IN skin of body0.166667
Number of experiments associating the term to the sequence
TermScore
surface water1.000000
depth (water) 0-100cm1.000000
depth (water) 0cm1.000000
LOWER IN external mucosa1.000000
LOWER IN sparus aurata1.000000
LOWER IN gill1.000000
fishpond1.000000
brackish water body1.000000
portuguese republic1.000000
estuary1.000000
fish farm1.000000
finfish farming process1.000000
semi-intensive aquaculture1.000000
portimão1.000000
LOWER IN dicentrarchus labrax1.000000
LOWER IN skin of body1.000000
dicentrarchus labrax1.000000
external mucosa1.000000
gill1.000000
skin of body1.000000
sparus aurata1.000000
LOWER IN surface water1.000000
LOWER IN depth (water) 0-100cm1.000000
LOWER IN depth (water) 0cm1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2585gpt-5Seabream (Sparus aurata) gill microbiota samples (dominant sparus aurata, fishpond, external mucosa, brackish water body, gill, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão)2026-03-17v41 / 12pendingNo
2585gpt-5Seabream (Sparus aurata) skin microbiota samples (dominant sparus aurata, fishpond, external mucosa, brackish water body, skin of body, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão)2026-03-17v41 / 13pendingNo
2585gpt-5Seabass (Dicentrarchus labrax) skin microbiota samples (dominant dicentrarchus labrax, fishpond, external mucosa, brackish water body, skin of body, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão)2026-03-17v41 / 21pendingNo
2585gpt-5Seabass (Dicentrarchus labrax) gill microbiota samples (dominant dicentrarchus labrax, fishpond, external mucosa, brackish water body, gill, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão)2026-03-17v41 / 21pendingNo
2585gpt-5Water microbiota samples from fishponds (dominant surface water, depth (water) 0-100cm, fishpond, brackish water body, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão, depth (water) 0cm)2026-03-17v41 / 21pendingNo
2585gpt-5Seabream (Sparus aurata) gill microbiota samples (common sparus aurata, fishpond, external mucosa, brackish water body, gill, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão)2026-03-17v41 / 40pendingNo
2585gpt-5Seabream (Sparus aurata) skin microbiota samples (common sparus aurata, fishpond, external mucosa, brackish water body, skin of body, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão)2026-03-17v41 / 52pendingNo
2585gpt-5Seabass skin microbiota vs water to assess environmental filtering ( high in dicentrarchus labrax external mucosa skin of body compared to surface water depth (water) 0-100cm depth (water) 0cm in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 67pendingNo
2585gpt-5Seabass (Dicentrarchus labrax) skin microbiota samples (common dicentrarchus labrax, fishpond, external mucosa, brackish water body, skin of body, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão)2026-03-17v41 / 72pendingNo
2585gpt-5Fish-associated skin microbiota vs surrounding water ( high in external mucosa dicentrarchus labrax sparus aurata skin of body compared to surface water depth (water) 0-100cm depth (water) 0cm in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 79pendingNo
2585gpt-5Seabass (Dicentrarchus labrax) gill microbiota samples (common dicentrarchus labrax, fishpond, external mucosa, brackish water body, gill, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão)2026-03-17v41 / 82pendingNo
2585gpt-5Seabream skin microbiota vs water to assess environmental filtering ( high in external mucosa sparus aurata skin of body compared to surface water depth (water) 0-100cm depth (water) 0cm in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 105pendingNo
2585gpt-5Skin vs gill microbiota within seabass ( high in gill compared to skin of body in dicentrarchus labrax fishpond external mucosa brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 117pendingNo
2585gpt-5Seabass gill microbiota vs water to assess environmental filtering ( high in dicentrarchus labrax external mucosa gill compared to surface water depth (water) 0-100cm depth (water) 0cm in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 121pendingNo
2585gpt-5Skin vs gill microbiota within seabream ( high in gill compared to skin of body in sparus aurata fishpond external mucosa brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 128pendingNo
2585gpt-5Seabream gill microbiota vs water to assess environmental filtering ( high in external mucosa sparus aurata gill compared to surface water depth (water) 0-100cm depth (water) 0cm in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 144pendingNo
2585gpt-5Host-species effect on skin microbiota (seabass vs seabream) ( high in sparus aurata compared to dicentrarchus labrax in fishpond external mucosa brackish water body skin of body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 164pendingNo
2585gpt-5Fish-associated gill microbiota vs surrounding water ( high in external mucosa dicentrarchus labrax sparus aurata gill compared to surface water depth (water) 0-100cm depth (water) 0cm in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 166pendingNo
2585gpt-5Water microbiota samples from fishponds (common surface water, depth (water) 0-100cm, fishpond, brackish water body, portuguese republic, estuary, fish farm, finfish farming process, semi-intensive aquaculture, portimão, depth (water) 0cm)2026-03-17v41 / 180pendingNo
2585gpt-5Host-species effect on gill microbiota (seabass vs seabream) ( high in sparus aurata compared to dicentrarchus labrax in fishpond external mucosa brackish water body gill portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 203pendingNo
2585gpt-5Skin vs gill microbiota within seabass ( high in skin of body compared to gill in dicentrarchus labrax fishpond external mucosa brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 316pendingNo
2585gpt-5Skin vs gill microbiota within seabream ( high in skin of body compared to gill in sparus aurata fishpond external mucosa brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 363pendingNo
2585gpt-5Host-species effect on skin microbiota (seabass vs seabream) ( high in dicentrarchus labrax compared to sparus aurata in fishpond external mucosa brackish water body skin of body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 472pendingNo
2585gpt-5Host-species effect on gill microbiota (seabass vs seabream) ( high in dicentrarchus labrax compared to sparus aurata in fishpond external mucosa brackish water body gill portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 568pendingNo
2585gpt-5Seabass skin microbiota vs water to assess environmental filtering ( high in surface water depth (water) 0-100cm depth (water) 0cm compared to dicentrarchus labrax external mucosa skin of body in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 856pendingNo
2585gpt-5Fish-associated skin microbiota vs surrounding water ( high in surface water depth (water) 0-100cm depth (water) 0cm compared to external mucosa dicentrarchus labrax sparus aurata skin of body in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 1018pendingNo
2585gpt-5Seabass gill microbiota vs water to assess environmental filtering ( high in surface water depth (water) 0-100cm depth (water) 0cm compared to dicentrarchus labrax external mucosa gill in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 1208pendingNo
2585gpt-5Seabream skin microbiota vs water to assess environmental filtering ( high in surface water depth (water) 0-100cm depth (water) 0cm compared to external mucosa sparus aurata skin of body in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 1242pendingNo
2585gpt-5Fish-associated gill microbiota vs surrounding water ( high in surface water depth (water) 0-100cm depth (water) 0cm compared to external mucosa dicentrarchus labrax sparus aurata gill in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 1480pendingNo
2585gpt-5Seabream gill microbiota vs water to assess environmental filtering ( high in surface water depth (water) 0-100cm depth (water) 0cm compared to external mucosa sparus aurata gill in fishpond brackish water body portuguese republic estuary fish farm finfish farming process semi-intensive aquaculture portimão )2026-03-17v41 / 1639pendingNo

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