Experiment ID: 2583

Field Description
namedrought stress results in a compartment-specific restructuring of the rice root-associated microbiomes (5516253) - gpt-5
proj_id5516253
sraprjna386367
date_of_upload17/03/2026 21:26
doi10.1128/mbio.00764-17
modelgpt-5
sample_groups_version18
dbbact_id171
dbbact_linkhttps://dbbact.org/exp_info/171
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
rice field0.500000
root interior0.428571
LOWER IN root interior0.315789
root endosphere0.300000
endosphere0.300000
greenhouse0.285714
LOWER IN root endosphere0.272727
LOWER IN endosphere0.272727
LOWER IN 0.243902
oryza sativa0.236559
LOWER IN oryza sativa0.222222
bulk soil0.196078
LOWER IN bulk soil0.166667
LOWER IN rhizosphere0.078947
state of california0.058824
rhizosphere0.037267
water0.035714
soil0.019417
control0.008823
LOWER IN control0.008671
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN root interior1.000000
LOWER IN oryza sativa1.000000
LOWER IN root endosphere0.500000
LOWER IN endosphere0.500000
root interior0.500000
rice field0.333333
root endosphere0.250000
endosphere0.250000
LOWER IN bulk soil0.250000
LOWER IN 0.200000
greenhouse0.166667
oryza sativa0.142857
bulk soil0.142857
LOWER IN rhizosphere0.050000
state of california0.030303
rhizosphere0.019608
water0.018182
soil0.009804
LOWER IN control0.004545
control0.004444
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
davis soil1.000000
agricultural soil1.000000
state of california1.000000
water1.000000
soil1.000000
united states of america1.000000
city of davis1.000000
greenhouse1.000000
biggs soil1.000000
rice field1.000000
oryza sativa0.687500
oryza glaberrima0.687500
drought0.593750
control0.593750
submerged bed0.593750
well-watered0.593750
rhizosphere environment0.375000
rhizosphere0.375000
root interior0.375000
root endosphere0.375000
endosphere0.375000
depth (soil)0.312500
bulk soil0.312500
LOWER IN 0.312500
LOWER IN root endosphere0.187500
LOWER IN endosphere0.187500
LOWER IN root interior0.187500
LOWER IN rhizosphere0.187500
LOWER IN rhizosphere environment0.187500
LOWER IN oryza sativa0.125000
LOWER IN oryza glaberrima0.125000
LOWER IN depth (soil)0.125000
LOWER IN bulk soil0.125000
LOWER IN drought0.093750
LOWER IN well-watered0.093750
LOWER IN control0.093750
LOWER IN submerged bed0.093750
Number of experiments associating the term to the sequence
TermScore
rhizosphere environment1.000000
rhizosphere1.000000
LOWER IN root endosphere1.000000
LOWER IN endosphere1.000000
LOWER IN root interior1.000000
drought1.000000
oryza sativa1.000000
control1.000000
submerged bed1.000000
davis soil1.000000
agricultural soil1.000000
state of california1.000000
water1.000000
soil1.000000
well-watered1.000000
united states of america1.000000
city of davis1.000000
oryza glaberrima1.000000
greenhouse1.000000
biggs soil1.000000
rice field1.000000
depth (soil)1.000000
bulk soil1.000000
LOWER IN oryza sativa1.000000
LOWER IN 1.000000
LOWER IN oryza glaberrima1.000000
LOWER IN rhizosphere1.000000
LOWER IN rhizosphere environment1.000000
LOWER IN drought1.000000
LOWER IN well-watered1.000000
LOWER IN control1.000000
LOWER IN submerged bed1.000000
root interior1.000000
root endosphere1.000000
endosphere1.000000
LOWER IN depth (soil)1.000000
LOWER IN bulk soil1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2583gpt-5Drought-treated rice rhizosphere microbiomes (16S amplicon) (dominant drought, oryza sativa, , , rhizosphere, davis soil, agricultural soil, state of california, rhizosphere environment, water, soil, united states of america, city of davis, oryza glaberrima, greenhouse, biggs soil, rice field)2026-03-17v41 / 1pendingNo
2583gpt-5Drought-treated bulk soil microbiomes (16S amplicon) (dominant drought, davis soil, agricultural soil, state of california, water, depth (soil), bulk soil, soil, united states of america, city of davis, greenhouse, biggs soil, rice field)2026-03-17v41 / 1pendingNo
2583gpt-5Well-watered rice rhizosphere microbiomes (16S amplicon) (dominant oryza sativa, rhizosphere, davis soil, rhizosphere environment, well-watered, rice field, control, agricultural soil, water, oryza glaberrima, , , soil, submerged bed, state of california, united states of america, city of davis, greenhouse, biggs soil)2026-03-17v41 / 2pendingNo
2583gpt-5Drought-treated rice endosphere microbiomes (16S amplicon) (dominant drought, oryza sativa, root interior, , davis soil, agricultural soil, state of california, water, soil, root endosphere, endosphere, united states of america, city of davis, oryza glaberrima, greenhouse, biggs soil, rice field)2026-03-17v41 / 3pendingNo
2583gpt-5Well-watered bulk soil microbiomes (16S amplicon) (dominant control, submerged bed, davis soil, agricultural soil, state of california, water, depth (soil), bulk soil, well-watered, united states of america, soil, city of davis, greenhouse, biggs soil, rice field)2026-03-17v41 / 3pendingNo
2583gpt-5Well-watered rice endosphere microbiomes (16S amplicon) (dominant oryza sativa, davis soil, well-watered, rice field, control, agricultural soil, water, endosphere, oryza glaberrima, , soil, root interior, submerged bed, state of california, root endosphere, united states of america, city of davis, greenhouse, biggs soil)2026-03-17v41 / 10pendingNo
2583gpt-5Effect of drought on bulk soil microbiomes (16S amplicon) ( high in drought compared to well-watered control submerged bed in davis soil agricultural soil state of california water depth (soil) bulk soil soil united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 18pendingNo
2583gpt-5Effect of drought on bulk soil microbiomes (16S amplicon) ( high in well-watered control submerged bed compared to drought in davis soil agricultural soil state of california water depth (soil) bulk soil soil united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 44pendingNo
2583gpt-5Root-associated vs bulk soil under well-watered conditions ( high in oryza sativa root interior rhizosphere rhizosphere environment root endosphere endosphere oryza glaberrima compared to depth (soil) bulk soil in control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 58pendingNo
2583gpt-5Compartment differences under drought: rhizosphere vs endosphere ( high in root endosphere endosphere root interior compared to rhizosphere environment rhizosphere in drought oryza sativa davis soil agricultural soil state of california water soil united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 64pendingNo
2583gpt-5Rhizosphere vs bulk soil under matched watering regime (differential recruitment to roots) ( high in depth (soil) bulk soil compared to oryza sativa rhizosphere rhizosphere environment oryza glaberrima in drought control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 73pendingNo
2583gpt-5Drought-treated rice endosphere microbiomes (16S amplicon) (common drought, oryza sativa, root interior, , davis soil, agricultural soil, state of california, water, soil, root endosphere, endosphere, united states of america, city of davis, oryza glaberrima, greenhouse, biggs soil, rice field)2026-03-17v41 / 94pendingNo
2583gpt-5Well-watered rice endosphere microbiomes (16S amplicon) (common oryza sativa, davis soil, well-watered, rice field, control, agricultural soil, water, endosphere, oryza glaberrima, , soil, root interior, submerged bed, state of california, root endosphere, united states of america, city of davis, greenhouse, biggs soil)2026-03-17v41 / 94pendingNo
2583gpt-5Drought response differs by root compartment (interaction test): rhizosphere vs endosphere ( high in root endosphere endosphere root interior compared to rhizosphere environment rhizosphere in drought oryza sativa control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 139pendingNo
2583gpt-5Root-associated vs bulk soil under drought ( high in oryza sativa root interior rhizosphere rhizosphere environment root endosphere endosphere oryza glaberrima compared to depth (soil) bulk soil in drought davis soil agricultural soil state of california water soil united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 140pendingNo
2583gpt-5Rhizosphere vs bulk soil under matched watering regime (differential recruitment to roots) ( high in oryza sativa rhizosphere rhizosphere environment oryza glaberrima compared to depth (soil) bulk soil in drought control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 140pendingNo
2583gpt-5Compartment differences under well-watered conditions: rhizosphere vs endosphere ( high in root endosphere endosphere root interior compared to rhizosphere environment rhizosphere in oryza sativa control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 156pendingNo
2583gpt-5Effect of drought on rice endosphere microbiomes (16S amplicon) ( high in well-watered control submerged bed compared to drought in oryza sativa root interior davis soil agricultural soil state of california water soil root endosphere endosphere united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 262pendingNo
2583gpt-5Effect of drought on rice endosphere microbiomes (16S amplicon) ( high in drought compared to well-watered control submerged bed in oryza sativa root interior davis soil agricultural soil state of california water soil root endosphere endosphere united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 299pendingNo
2583gpt-5Endosphere vs bulk soil under matched watering regime (host filtering strength) ( high in oryza sativa root interior root endosphere endosphere oryza glaberrima compared to depth (soil) bulk soil in drought control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 388pendingNo
2583gpt-5Drought-treated rice rhizosphere microbiomes (16S amplicon) (common drought, oryza sativa, , , rhizosphere, davis soil, agricultural soil, state of california, rhizosphere environment, water, soil, united states of america, city of davis, oryza glaberrima, greenhouse, biggs soil, rice field)2026-03-17v41 / 485pendingNo
2583gpt-5Well-watered rice rhizosphere microbiomes (16S amplicon) (common oryza sativa, rhizosphere, davis soil, rhizosphere environment, well-watered, rice field, control, agricultural soil, water, oryza glaberrima, , , soil, submerged bed, state of california, united states of america, city of davis, greenhouse, biggs soil)2026-03-17v41 / 546pendingNo
2583gpt-5Drought-treated bulk soil microbiomes (16S amplicon) (common drought, davis soil, agricultural soil, state of california, water, depth (soil), bulk soil, soil, united states of america, city of davis, greenhouse, biggs soil, rice field)2026-03-17v41 / 617pendingNo
2583gpt-5Well-watered bulk soil microbiomes (16S amplicon) (common control, submerged bed, davis soil, agricultural soil, state of california, water, depth (soil), bulk soil, well-watered, united states of america, soil, city of davis, greenhouse, biggs soil, rice field)2026-03-17v41 / 692pendingNo
2583gpt-5Root-associated vs bulk soil under well-watered conditions ( high in depth (soil) bulk soil compared to oryza sativa root interior rhizosphere rhizosphere environment root endosphere endosphere oryza glaberrima in control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 724pendingNo
2583gpt-5Effect of drought on rice rhizosphere microbiomes (16S amplicon) ( high in drought compared to well-watered control submerged bed in oryza sativa rhizosphere davis soil agricultural soil state of california rhizosphere environment water soil united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 800pendingNo
2583gpt-5Effect of drought on rice rhizosphere microbiomes (16S amplicon) ( high in well-watered control submerged bed compared to drought in oryza sativa rhizosphere davis soil agricultural soil state of california rhizosphere environment water soil united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 1274pendingNo
2583gpt-5Root-associated vs bulk soil under drought ( high in depth (soil) bulk soil compared to oryza sativa root interior rhizosphere rhizosphere environment root endosphere endosphere oryza glaberrima in drought davis soil agricultural soil state of california water soil united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 1536pendingNo
2583gpt-5Compartment differences under drought: rhizosphere vs endosphere ( high in rhizosphere environment rhizosphere compared to root endosphere endosphere root interior in drought oryza sativa davis soil agricultural soil state of california water soil united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 5794pendingNo
2583gpt-5Compartment differences under well-watered conditions: rhizosphere vs endosphere ( high in rhizosphere environment rhizosphere compared to root endosphere endosphere root interior in oryza sativa control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 6309pendingNo
2583gpt-5Endosphere vs bulk soil under matched watering regime (host filtering strength) ( high in depth (soil) bulk soil compared to oryza sativa root interior root endosphere endosphere oryza glaberrima in drought control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis greenhouse biggs soil rice field )2026-03-17v41 / 6656pendingNo
2583gpt-5Drought response differs by root compartment (interaction test): rhizosphere vs endosphere ( high in rhizosphere environment rhizosphere compared to root endosphere endosphere root interior in drought oryza sativa control submerged bed davis soil agricultural soil state of california water soil well-watered united states of america city of davis oryza glaberrima greenhouse biggs soil rice field )2026-03-17v41 / 8085pendingNo

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