Experiment ID: 2582

Field Description
namelinking spatial structure and community-level biotic interactions through cooccurrence and time series modeling of the human intestinal microbiota (5585691) - gpt-5
proj_id5585691
sraprjna387407
date_of_upload17/03/2026 21:05
doi10.1128/msystems.00086-17
modelgpt-5
sample_groups_version18
dbbact_id194
dbbact_linkhttps://dbbact.org/exp_info/194
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
oslo0.500000
descending colon0.400000
transverse colon0.400000
ascending colon0.285714
sigmoid colon0.222222
LOWER IN descending colon0.222222
LOWER IN transverse colon0.222222
LOWER IN sigmoid colon0.222222
LOWER IN ascending colon0.181818
LOWER IN intestine0.153846
LOWER IN biopsy0.153846
kingdom of norway0.125000
biopsy0.105263
LOWER IN rectum0.105263
rectum0.080000
LOWER IN ileum0.057143
ileum0.051282
intestine0.031746
LOWER IN feces0.030769
human adult stage0.023256
homo sapiens0.002591
feces0.002291
Fraction of dbbact annotations with this term covered by the query
TermScore
oslo0.333333
descending colon0.333333
transverse colon0.333333
LOWER IN descending colon0.333333
LOWER IN transverse colon0.333333
LOWER IN sigmoid colon0.333333
ascending colon0.200000
LOWER IN ascending colon0.200000
sigmoid colon0.142857
LOWER IN intestine0.142857
LOWER IN biopsy0.142857
LOWER IN rectum0.076923
kingdom of norway0.066667
biopsy0.058824
rectum0.043478
LOWER IN ileum0.034483
ileum0.027027
LOWER IN feces0.016949
intestine0.016393
human adult stage0.011765
homo sapiens0.001297
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
oslo1.000000
human adult stage1.000000
kingdom of norway1.000000
homo sapiens1.000000
intestine0.500000
descending colon0.500000
ascending colon0.500000
transverse colon0.500000
ileocecal valve0.500000
rectum0.500000
sigmoid colon0.500000
ileum0.500000
spatial sampling0.500000
colonoscopy0.500000
biopsy0.500000
feces0.500000
time series0.500000
LOWER IN intestine0.166667
LOWER IN descending colon0.166667
LOWER IN ascending colon0.166667
LOWER IN transverse colon0.166667
LOWER IN ileocecal valve0.166667
LOWER IN rectum0.166667
LOWER IN sigmoid colon0.166667
LOWER IN ileum0.166667
LOWER IN spatial sampling0.166667
LOWER IN colonoscopy0.166667
LOWER IN biopsy0.166667
LOWER IN feces0.166667
LOWER IN time series0.166667
Number of experiments associating the term to the sequence
TermScore
oslo1.000000
intestine1.000000
descending colon1.000000
ascending colon1.000000
transverse colon1.000000
ileocecal valve1.000000
rectum1.000000
sigmoid colon1.000000
ileum1.000000
human adult stage1.000000
spatial sampling1.000000
colonoscopy1.000000
kingdom of norway1.000000
homo sapiens1.000000
biopsy1.000000
feces1.000000
time series1.000000
LOWER IN intestine1.000000
LOWER IN descending colon1.000000
LOWER IN ascending colon1.000000
LOWER IN transverse colon1.000000
LOWER IN ileocecal valve1.000000
LOWER IN rectum1.000000
LOWER IN sigmoid colon1.000000
LOWER IN ileum1.000000
LOWER IN spatial sampling1.000000
LOWER IN colonoscopy1.000000
LOWER IN biopsy1.000000
LOWER IN feces1.000000
LOWER IN time series1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2582gpt-5Human intestinal biopsy samples (spatial sites, 16S amplicon) (dominant oslo, intestine, descending colon, ascending colon, transverse colon, ileocecal valve, rectum, sigmoid colon, ileum, human adult stage, spatial sampling, colonoscopy, kingdom of norway, homo sapiens, biopsy)2026-03-17v41 / 16pendingNo
2582gpt-5Human fecal samples (time series, 16S amplicon) (dominant feces, oslo, human adult stage, kingdom of norway, time series, homo sapiens)2026-03-17v41 / 22pendingNo
2582gpt-5Fecal (luminal) vs intestinal biopsy (mucosal) microbiome in humans (16S) ( high in intestine descending colon ascending colon transverse colon ileocecal valve rectum sigmoid colon ileum spatial sampling colonoscopy biopsy compared to feces time series in oslo homo sapiens kingdom of norway human adult stage )2026-03-17v41 / 197pendingNo
2582gpt-5Fecal (luminal) vs intestinal biopsy (mucosal) microbiome in humans (16S) ( high in feces time series compared to intestine descending colon ascending colon transverse colon ileocecal valve rectum sigmoid colon ileum spatial sampling colonoscopy biopsy in oslo homo sapiens kingdom of norway human adult stage )2026-03-17v41 / 224pendingNo
2582gpt-5Human fecal samples (time series, 16S amplicon) (common feces, oslo, human adult stage, kingdom of norway, time series, homo sapiens)2026-03-17v41 / 238pendingNo
2582gpt-5Human intestinal biopsy samples (spatial sites, 16S amplicon) (common oslo, intestine, descending colon, ascending colon, transverse colon, ileocecal valve, rectum, sigmoid colon, ileum, human adult stage, spatial sampling, colonoscopy, kingdom of norway, homo sapiens, biopsy)2026-03-17v41 / 241pendingNo

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