dbBact

This is the development server

Experiment ID: 258

Field	Description
name	immune response and mortality risk relate to distinct lung microbiomes in hivpneumonia patients
sra	srp077299
datamd5	6e8ec87ae5e5545a28b2d31677245b64
mapmd5	7d70d7218e314ddcbb9901271cd83383

Annotations for experiment:

term enrichment score

Term	Score
pneumonia	0.666667
uganda	0.500000
bronchial epithelium	0.333333
no ceftriaxone	0.333333
LOWER IN ceftriaxone	0.333333
ceftriaxone	0.333333
LOWER IN no ceftriaxone	0.333333
bronchoalveolar lavage	0.250000
lung	0.181818
hiv infection	0.166667
homo sapiens	0.005236

Fraction of dbbact annotations with this term covered by the query

Term	Score
pneumonia	0.500000
no ceftriaxone	0.500000
LOWER IN ceftriaxone	0.500000
ceftriaxone	0.500000
LOWER IN no ceftriaxone	0.500000
uganda	0.333333
bronchial epithelium	0.200000
bronchoalveolar lavage	0.142857
lung	0.100000
hiv infection	0.090909
homo sapiens	0.002625

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
lung	1.000000
bronchoalveolar lavage	1.000000
hiv infection	1.000000
bronchial epithelium	1.000000
uganda	1.000000
pneumonia	1.000000
no ceftriaxone	0.250000
LOWER IN ceftriaxone	0.250000
ceftriaxone	0.250000
LOWER IN no ceftriaxone	0.250000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
lung	1.000000
bronchoalveolar lavage	1.000000
hiv infection	1.000000
bronchial epithelium	1.000000
uganda	1.000000
pneumonia	1.000000
no ceftriaxone	1.000000
LOWER IN ceftriaxone	1.000000
ceftriaxone	1.000000
LOWER IN no ceftriaxone	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
258	amnon	high freq. in lungs of hiv patients with pneumonia (dominant homo sapiens, lung, bronchoalveolar lavage, hiv infection, bronchial epithelium, uganda, pneumonia)	2017-11-27	v4	1 / 25	approved	No
258	amnon	higher lungs of hiv pneumonia patients treated with ceftriaxone ( high in ceftriaxone compared to no ceftriaxone in homo sapiens lung bronchoalveolar lavage hiv infection bronchial epithelium uganda pneumonia )	2017-11-27	v4	1 / 35	approved	No
258	amnon	higher lungs of hiv pneumonia patients not treated with ceftriaxone ( high in no ceftriaxone compared to ceftriaxone in homo sapiens lung bronchoalveolar lavage hiv infection bronchial epithelium uganda pneumonia )	2017-11-27	v4	1 / 47	approved	No
258	amnon	common in lungs of hiv patients with pneumonia (common homo sapiens, lung, bronchoalveolar lavage, hiv infection, bronchial epithelium, uganda, pneumonia)	2017-11-27	v4	1 / 49	approved	No

Showing 1 to 4 of 4 entries

Problems / suggestions? Please visit the dbBact forum