Experiment ID: 2579

Field Description
namematuration of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease (6709555) - gpt-5
proj_id6709555
sraprjna546004
date_of_upload17/03/2026 20:20
doi10.1186/s13059-019-1789-x
modelgpt-5
sample_groups_version18
dbbact_id671
dbbact_linkhttps://dbbact.org/exp_info/671
needs_manual_reviewtrue

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN post-weaning1.000000
LOWER IN 8-month-old human stage1.000000
LOWER IN antimicrobial agent1.000000
outdoor0.500000
8-month-old human stage0.500000
antimicrobial agent0.500000
post-weaning0.333333
LOWER IN 0.200000
LOWER IN diarrhea0.200000
LOWER IN 1-month-old human stage0.166667
LOWER IN adult organism0.166667
macaca mulatta0.125000
1-month-old human stage0.125000
diarrhea0.111111
LOWER IN female organism0.111111
rectal swab0.058824
female organism0.052632
adult organism0.047619
LOWER IN adult0.040000
captive0.031250
adult0.004082
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
primate research center1.000000
rectal swab1.000000
city of portland1.000000
captive1.000000
outdoor1.000000
city of davis1.000000
macaca mulatta1.000000
adult organism0.333333
female organism0.333333
adult0.333333
post-weaning0.333333
8-month-old human stage0.333333
antimicrobial agent0.333333
diarrhea0.333333
1-month-old human stage0.333333
LOWER IN 1-month-old human stage0.166667
LOWER IN post-weaning0.166667
LOWER IN 8-month-old human stage0.166667
LOWER IN antimicrobial agent0.166667
LOWER IN diarrhea0.166667
nutraceutical0.166667
LOWER IN adult organism0.166667
LOWER IN female organism0.166667
LOWER IN adult0.166667
LOWER IN 0.083333
LOWER IN nutraceutical0.083333
Number of experiments associating the term to the sequence
TermScore
adult organism1.000000
female organism1.000000
adult1.000000
LOWER IN 1-month-old human stage1.000000
united states of america1.000000
primate research center1.000000
rectal swab1.000000
city of portland1.000000
captive1.000000
outdoor1.000000
city of davis1.000000
macaca mulatta1.000000
post-weaning1.000000
8-month-old human stage1.000000
antimicrobial agent1.000000
diarrhea1.000000
LOWER IN post-weaning1.000000
LOWER IN 1.000000
LOWER IN 8-month-old human stage1.000000
LOWER IN antimicrobial agent1.000000
LOWER IN diarrhea1.000000
nutraceutical1.000000
1-month-old human stage1.000000
LOWER IN adult organism1.000000
LOWER IN female organism1.000000
LOWER IN adult1.000000
LOWER IN nutraceutical1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2579gpt-5Adult dam rhesus macaque rectal swab samples (dominant adult organism, united states of america, primate research center, rectal swab, city of portland, captive, adult, outdoor, city of davis, macaca mulatta, female organism)2026-03-17v41 / 15pendingNo
2579gpt-5Infant rhesus macaque rectal swab samples at 8 months of age (dominant united states of america, rectal swab, primate research center, city of portland, captive, post-weaning, nutraceutical, outdoor, city of davis, macaca mulatta, 8-month-old human stage, antimicrobial agent, diarrhea)2026-03-17v41 / 19pendingNo
2579gpt-5Infant rhesus macaque rectal swab samples at 1 month of age (dominant united states of america, primate research center, rectal swab, city of portland, captive, outdoor, city of davis, macaca mulatta, 1-month-old human stage)2026-03-17v41 / 20pendingNo
2579gpt-5Infant rhesus macaque rectal swab samples at 1 month of age (common united states of america, primate research center, rectal swab, city of portland, captive, outdoor, city of davis, macaca mulatta, 1-month-old human stage)2026-03-17v41 / 81pendingNo
2579gpt-5Infant gut microbiome maturation from 1 to 8 months (rectal swabs, rhesus macaque) ( high in 1-month-old human stage compared to post-weaning nutraceutical 8-month-old human stage antimicrobial agent diarrhea in united states of america primate research center rectal swab city of portland captive outdoor city of davis macaca mulatta )2026-03-17v41 / 162pendingNo
2579gpt-5Late-infancy (8 months) vs adult dam gut microbiome (convergence toward adult-like state) ( high in post-weaning 8-month-old human stage antimicrobial agent diarrhea compared to adult organism female organism adult in united states of america primate research center rectal swab city of portland captive outdoor city of davis macaca mulatta )2026-03-17v41 / 180pendingNo
2579gpt-5Infant (1 month) vs adult dam gut microbiome (vertical/transgenerational differences) ( high in 1-month-old human stage compared to adult organism female organism adult in united states of america primate research center rectal swab city of portland captive outdoor city of davis macaca mulatta )2026-03-17v41 / 198pendingNo
2579gpt-5Infant rhesus macaque rectal swab samples at 8 months of age (common united states of america, rectal swab, primate research center, city of portland, captive, post-weaning, nutraceutical, outdoor, city of davis, macaca mulatta, 8-month-old human stage, antimicrobial agent, diarrhea)2026-03-17v41 / 252pendingNo
2579gpt-5Adult dam rhesus macaque rectal swab samples (common adult organism, united states of america, primate research center, rectal swab, city of portland, captive, adult, outdoor, city of davis, macaca mulatta, female organism)2026-03-17v41 / 360pendingNo
2579gpt-5Late-infancy (8 months) vs adult dam gut microbiome (convergence toward adult-like state) ( high in adult organism female organism adult compared to post-weaning 8-month-old human stage antimicrobial agent diarrhea in united states of america primate research center rectal swab city of portland captive outdoor city of davis macaca mulatta )2026-03-17v41 / 951pendingNo
2579gpt-5Infant gut microbiome maturation from 1 to 8 months (rectal swabs, rhesus macaque) ( high in post-weaning 8-month-old human stage antimicrobial agent diarrhea compared to 1-month-old human stage in united states of america primate research center rectal swab city of portland captive outdoor city of davis macaca mulatta )2026-03-17v41 / 1363pendingNo
2579gpt-5Infant (1 month) vs adult dam gut microbiome (vertical/transgenerational differences) ( high in adult organism female organism adult compared to 1-month-old human stage in united states of america primate research center rectal swab city of portland captive outdoor city of davis macaca mulatta )2026-03-17v41 / 1645pendingNo

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