Experiment ID: 2578

Field Description
nameinteractions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural gambian children (8550991) - gpt-5
proj_id8550991
sraprjna727842
date_of_upload17/03/2026 19:55
doi10.1016/j.ebiom.2021.103644
modelgpt-5
sample_groups_version18
dbbact_id966
dbbact_linkhttps://dbbact.org/exp_info/966
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
malnutrition0.666667
amoxicillin0.666667
infant stage0.500000
gambia0.500000
LOWER IN amoxicillin0.250000
LOWER IN control0.008850
control0.008811
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
amoxicillin1.000000
malnutrition0.500000
LOWER IN amoxicillin0.500000
infant stage0.333333
gambia0.333333
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
infant stage1.000000
kiang central district1.000000
kiang east district1.000000
kiang west district1.000000
rural settlement1.000000
rural area1.000000
ready-to-use therapeutic food1.000000
homo sapiens1.000000
outpatient nutritional rehabilitation1.000000
gambia1.000000
feces1.000000
malnutrition1.000000
marasmus0.500000
non-edematous0.500000
amoxicillin0.500000
control0.500000
well-nourished0.500000
LOWER IN well-nourished0.166667
LOWER IN control0.166667
LOWER IN marasmus0.166667
LOWER IN non-edematous0.166667
LOWER IN amoxicillin0.166667
Number of experiments associating the term to the sequence
TermScore
infant stage1.000000
kiang central district1.000000
marasmus1.000000
non-edematous1.000000
kiang east district1.000000
kiang west district1.000000
rural settlement1.000000
rural area1.000000
ready-to-use therapeutic food1.000000
homo sapiens1.000000
outpatient nutritional rehabilitation1.000000
gambia1.000000
feces1.000000
malnutrition1.000000
amoxicillin1.000000
control1.000000
well-nourished1.000000
LOWER IN well-nourished1.000000
LOWER IN control1.000000
LOWER IN marasmus1.000000
LOWER IN non-edematous1.000000
LOWER IN amoxicillin1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2578gpt-5Severity gradient: SAM vs MAM in Gambian children ( high in well-nourished control compared to marasmus non-edematous amoxicillin in infant stage kiang central district kiang east district kiang west district rural settlement rural area ready-to-use therapeutic food homo sapiens outpatient nutritional rehabilitation gambia feces malnutrition )2026-03-17v31 / 7pendingNo
2578gpt-5Severity gradient: SAM vs MAM in Gambian children ( high in marasmus non-edematous amoxicillin compared to well-nourished control in infant stage kiang central district kiang east district kiang west district rural settlement rural area ready-to-use therapeutic food homo sapiens outpatient nutritional rehabilitation gambia feces malnutrition )2026-03-17v31 / 14pendingNo
2578gpt-5Severe acute malnutrition (SAM) Gambian child fecal samples (dominant infant stage, kiang central district, marasmus, non-edematous, kiang east district, kiang west district, rural settlement, rural area, ready-to-use therapeutic food, homo sapiens, outpatient nutritional rehabilitation, gambia, feces, malnutrition, amoxicillin)2026-03-17v31 / 21pendingNo
2578gpt-5Moderate acute malnutrition (MAM) Gambian child fecal samples + Well-nourished Gambian child fecal samples (common infant stage, kiang central district, control, kiang east district, kiang west district, well-nourished, ready-to-use therapeutic food, rural area, rural settlement, homo sapiens, outpatient nutritional rehabilitation, gambia, feces, malnutrition)2026-03-17v31 / 22pendingNo
2578gpt-5Moderate acute malnutrition (MAM) Gambian child fecal samples + Well-nourished Gambian child fecal samples (dominant infant stage, kiang central district, control, kiang east district, kiang west district, well-nourished, ready-to-use therapeutic food, rural area, rural settlement, homo sapiens, outpatient nutritional rehabilitation, gambia, feces, malnutrition)2026-03-17v31 / 22pendingNo
2578gpt-5Severe acute malnutrition (SAM) Gambian child fecal samples (common infant stage, kiang central district, marasmus, non-edematous, kiang east district, kiang west district, rural settlement, rural area, ready-to-use therapeutic food, homo sapiens, outpatient nutritional rehabilitation, gambia, feces, malnutrition, amoxicillin)2026-03-17v31 / 26pendingNo

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