Experiment ID: 2569

Field Description
nameoral seeding and niche-adaptation of middle ear biofilms in health (7822943) - gpt-5
proj_id7822943
sraprjna473788
date_of_upload17/03/2026 19:00
doi10.1016/j.bioflm.2020.100041
modelgpt-5
sample_groups_version18
dbbact_id731
dbbact_linkhttps://dbbact.org/exp_info/731
needs_manual_reviewfalse

Annotations for experiment:

term enrichment score
TermScore
buccal mucosa0.222222
young adult stage0.200000
LOWER IN buccal mucosa0.181818
LOWER IN control0.008850
control0.008811
united states of america0.006645
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN buccal mucosa0.200000
buccal mucosa0.142857
young adult stage0.111111
LOWER IN control0.004545
control0.004444
united states of america0.003333
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
young adult stage1.000000
united states of america1.000000
city of east lansing1.000000
clinic room1.000000
homo sapiens1.000000
buccal mucosa0.500000
control0.500000
mucosa of middle ear0.500000
tympanic cavity0.500000
pharyngotympanic tube0.500000
LOWER IN tympanic cavity0.166667
LOWER IN mucosa of middle ear0.166667
LOWER IN pharyngotympanic tube0.166667
LOWER IN buccal mucosa0.166667
LOWER IN control0.166667
Number of experiments associating the term to the sequence
TermScore
young adult stage1.000000
united states of america1.000000
buccal mucosa1.000000
city of east lansing1.000000
clinic room1.000000
homo sapiens1.000000
control1.000000
mucosa of middle ear1.000000
tympanic cavity1.000000
pharyngotympanic tube1.000000
LOWER IN tympanic cavity1.000000
LOWER IN mucosa of middle ear1.000000
LOWER IN pharyngotympanic tube1.000000
LOWER IN buccal mucosa1.000000
LOWER IN control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2569gpt-5Middle ear (otic) secretion vs buccal microbiome (potential oral seeding of otic space) ( high in tympanic cavity mucosa of middle ear pharyngotympanic tube compared to buccal mucosa control in young adult stage homo sapiens united states of america city of east lansing clinic room )2026-03-17v41 / 8pendingNo
2569gpt-5Human buccal samples (dominant young adult stage, united states of america, buccal mucosa, city of east lansing, clinic room, homo sapiens, control)2026-03-17v41 / 13pendingNo
2569gpt-5Human middle ear secretion (otic) samples (dominant young adult stage, mucosa of middle ear, united states of america, homo sapiens, city of east lansing, clinic room, tympanic cavity, pharyngotympanic tube)2026-03-17v41 / 21pendingNo
2569gpt-5Middle ear (otic) secretion vs buccal microbiome (potential oral seeding of otic space) ( high in buccal mucosa control compared to tympanic cavity mucosa of middle ear pharyngotympanic tube in young adult stage homo sapiens united states of america city of east lansing clinic room )2026-03-17v41 / 59pendingNo
2569gpt-5Human middle ear secretion (otic) samples (common young adult stage, mucosa of middle ear, united states of america, homo sapiens, city of east lansing, clinic room, tympanic cavity, pharyngotympanic tube)2026-03-17v41 / 69pendingNo
2569gpt-5Human buccal samples (common young adult stage, united states of america, buccal mucosa, city of east lansing, clinic room, homo sapiens, control)2026-03-17v41 / 86pendingNo

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