Experiment ID: 2560

Field Description
namesalivary microbiome profiles of oral cancer patients analyzed before and after treatment (10403937) - gpt-5
sample_groups_version18
dbbact_id1033
proj_id10403937
sraprjna997108
date_of_upload17/03/2026 18:30
doi10.1186/s40168-023-01613-y
modelgpt-5
dbbact_linkhttps://dbbact.org/exp_info/1033
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
oral squamous cell carcinoma0.562500
helsinki0.500000
LOWER IN hospital0.352941
LOWER IN oral squamous cell carcinoma0.300000
hospital0.173077
finland0.166667
human adult stage0.045455
saliva0.029412
LOWER IN control0.008902
control0.008780
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN hospital1.000000
LOWER IN oral squamous cell carcinoma0.500000
oral squamous cell carcinoma0.500000
helsinki0.333333
hospital0.100000
finland0.090909
human adult stage0.023256
saliva0.014925
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
helsinki1.000000
finland1.000000
homo sapiens1.000000
human adult stage1.000000
saliva1.000000
hospital0.642857
oral squamous cell carcinoma0.642857
day activity center0.357143
control0.357143
healthy0.357143
pre-treatment0.357143
post-treatment0.357143
radiotherapy0.357143
follow-up 35-78 months0.357143
LOWER IN hospital0.214286
LOWER IN post-treatment0.214286
LOWER IN oral squamous cell carcinoma0.214286
LOWER IN radiotherapy0.214286
LOWER IN pre-treatment0.214286
LOWER IN follow-up 35-78 months0.214286
LOWER IN day activity center0.214286
LOWER IN control0.214286
LOWER IN healthy0.214286
Number of experiments associating the term to the sequence
TermScore
helsinki1.000000
finland1.000000
day activity center1.000000
homo sapiens1.000000
control1.000000
healthy1.000000
human adult stage1.000000
saliva1.000000
LOWER IN hospital1.000000
LOWER IN post-treatment1.000000
LOWER IN oral squamous cell carcinoma1.000000
LOWER IN radiotherapy1.000000
LOWER IN pre-treatment1.000000
LOWER IN follow-up 35-78 months1.000000
hospital1.000000
oral squamous cell carcinoma1.000000
pre-treatment1.000000
LOWER IN day activity center1.000000
LOWER IN control1.000000
LOWER IN healthy1.000000
post-treatment1.000000
radiotherapy1.000000
follow-up 35-78 months1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2560gpt-5Pre- vs post-treatment in OSCC patients (treatment-associated microbiome shifts) ( high in post-treatment follow-up 35-78 months radiotherapy compared to pre-treatment in helsinki hospital oral squamous cell carcinoma finland homo sapiens human adult stage saliva )2026-03-17v41 / 3pendingNo
2560gpt-5Pre- vs post-treatment in OSCC patients (treatment-associated microbiome shifts) ( high in pre-treatment compared to post-treatment follow-up 35-78 months radiotherapy in helsinki hospital oral squamous cell carcinoma finland homo sapiens human adult stage saliva )2026-03-17v41 / 4pendingNo
2560gpt-5Pre-treatment OSCC patient salivary samples (dominant helsinki, hospital, oral squamous cell carcinoma, finland, pre-treatment, homo sapiens, human adult stage, saliva)2026-03-17v41 / 17pendingNo
2560gpt-5Post-treatment OSCC vs healthy controls (microbiome recovery toward health) ( high in hospital oral squamous cell carcinoma post-treatment radiotherapy follow-up 35-78 months compared to day activity center control healthy in helsinki finland homo sapiens human adult stage saliva )2026-03-17v41 / 18pendingNo
2560gpt-5Post-treatment OSCC patient salivary samples (dominant helsinki, hospital, post-treatment, oral squamous cell carcinoma, finland, radiotherapy, homo sapiens, follow-up 35-78 months, human adult stage, saliva)2026-03-17v41 / 19pendingNo
2560gpt-5Healthy control salivary samples (dominant helsinki, finland, day activity center, homo sapiens, control, healthy, human adult stage, saliva)2026-03-17v41 / 21pendingNo
2560gpt-5OSCC disease trajectory across treatment (ordering: pre-treatment → post-treatment → healthy reference) ( high in hospital post-treatment oral squamous cell carcinoma radiotherapy pre-treatment follow-up 35-78 months compared to day activity center control healthy in helsinki finland homo sapiens human adult stage saliva )2026-03-17v41 / 23pendingNo
2560gpt-5Post-treatment OSCC patient salivary samples (common helsinki, hospital, post-treatment, oral squamous cell carcinoma, finland, radiotherapy, homo sapiens, follow-up 35-78 months, human adult stage, saliva)2026-03-17v41 / 37pendingNo
2560gpt-5Post-treatment OSCC vs healthy controls (microbiome recovery toward health) ( high in day activity center control healthy compared to hospital oral squamous cell carcinoma post-treatment radiotherapy follow-up 35-78 months in helsinki finland homo sapiens human adult stage saliva )2026-03-17v41 / 40pendingNo
2560gpt-5Pre-treatment OSCC vs healthy controls (salivary microbiome differences at diagnosis) ( high in day activity center control healthy compared to hospital pre-treatment oral squamous cell carcinoma in helsinki finland homo sapiens human adult stage saliva )2026-03-17v41 / 46pendingNo
2560gpt-5Pre-treatment OSCC vs healthy controls (salivary microbiome differences at diagnosis) ( high in hospital pre-treatment oral squamous cell carcinoma compared to day activity center control healthy in helsinki finland homo sapiens human adult stage saliva )2026-03-17v41 / 48pendingNo
2560gpt-5Pre-treatment OSCC patient salivary samples (common helsinki, hospital, oral squamous cell carcinoma, finland, pre-treatment, homo sapiens, human adult stage, saliva)2026-03-17v41 / 59pendingNo
2560gpt-5OSCC disease trajectory across treatment (ordering: pre-treatment → post-treatment → healthy reference) ( high in day activity center control healthy compared to hospital post-treatment oral squamous cell carcinoma radiotherapy pre-treatment follow-up 35-78 months in helsinki finland homo sapiens human adult stage saliva )2026-03-17v41 / 60pendingNo
2560gpt-5Healthy control salivary samples (common helsinki, finland, day activity center, homo sapiens, control, healthy, human adult stage, saliva)2026-03-17v41 / 68pendingNo

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