Experiment ID: 256

Field Description
namecomposition and diversity of mucosa-associated microbiota along the entire length of the pig gastrointestinal tract; dietary influences
sraerp016424
qiita prjeb14756
datamd5647b20727efd574a8d836a6f50323da2
mapmd58e233c3861f20390986d9b222168305f

Annotations for experiment:

term enrichment score
TermScore
left colon0.187500
LOWER IN left colon0.160000
right colon0.157895
sucram0.142857
LOWER IN sucram0.142857
LOWER IN intestinal contents0.142857
LOWER IN right colon0.137931
LOWER IN standard feed0.125000
standard feed0.125000
LOWER IN mucosa0.111111
gastrointestinal system0.108108
mucosa0.100000
LOWER IN jejunum0.097561
jejunum0.096774
intestinal contents0.090909
LOWER IN duodenum0.070175
united kingdom0.062500
duodenum0.061224
sus scrofa0.058824
pig0.058824
ileum0.050314
LOWER IN ileum0.050000
LOWER IN caecum0.047059
diet0.038095
caecum0.019763
Fraction of dbbact annotations with this term covered by the query
TermScore
sucram0.333333
LOWER IN sucram0.333333
LOWER IN intestinal contents0.333333
LOWER IN standard feed0.200000
standard feed0.200000
left colon0.142857
LOWER IN left colon0.142857
LOWER IN mucosa0.142857
right colon0.111111
LOWER IN right colon0.111111
mucosa0.111111
intestinal contents0.090909
gastrointestinal system0.076923
LOWER IN jejunum0.066667
jejunum0.058824
LOWER IN duodenum0.043478
LOWER IN ileum0.034483
duodenum0.034483
united kingdom0.032258
sus scrofa0.030303
pig0.030303
ileum0.027027
LOWER IN caecum0.027027
diet0.021277
caecum0.010101
Fraction of annotations for the query sequences containing the term
TermScore
sus scrofa1.000000
pig1.000000
united kingdom1.000000
caecum0.454545
ileum0.363636
right colon0.272727
left colon0.272727
duodenum0.272727
jejunum0.272727
LOWER IN duodenum0.181818
LOWER IN jejunum0.181818
LOWER IN caecum0.181818
LOWER IN right colon0.181818
LOWER IN left colon0.181818
gastrointestinal system0.181818
diet0.181818
LOWER IN ileum0.090909
sucram0.090909
LOWER IN standard feed0.090909
LOWER IN sucram0.090909
standard feed0.090909
LOWER IN mucosa0.090909
intestinal contents0.090909
mucosa0.090909
LOWER IN intestinal contents0.090909
Number of experiments associating the term to the sequence
TermScore
sus scrofa1.000000
pig1.000000
caecum1.000000
right colon1.000000
left colon1.000000
LOWER IN duodenum1.000000
LOWER IN jejunum1.000000
LOWER IN ileum1.000000
united kingdom1.000000
duodenum1.000000
jejunum1.000000
ileum1.000000
LOWER IN caecum1.000000
LOWER IN right colon1.000000
LOWER IN left colon1.000000
gastrointestinal system1.000000
diet1.000000
sucram1.000000
LOWER IN standard feed1.000000
LOWER IN sucram1.000000
standard feed1.000000
LOWER IN mucosa1.000000
intestinal contents1.000000
mucosa1.000000
LOWER IN intestinal contents1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
256amnonhigher in illeum compared to other gi tract locations in pigs ( high in ileum compared to duodenum jejunum caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v41 / 1approvedNo
256amnondominant sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v41 / 10approvedNo
256amnondominant sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v41 / 19approvedNo
256amnonlower in intestinal contents compared to mucosal scraping in pig caecum ( high in mucosa compared to intestinal contents in sus scrofa pig caecum united kingdom )2017-11-26v41 / 50approvedNo
256amnonhigher in intestinal contents compared to mucosal scraping in pig caecum ( high in intestinal contents compared to mucosa in sus scrofa pig caecum united kingdom )2017-11-26v41 / 103approvedNo
256amnonhigher in control diet compared to diet enriched with sucram in pig gut ( high in diet standard feed compared to sucram in gastrointestinal system sus scrofa pig united kingdom )2017-11-26v41 / 109approvedNo
256amnonlower in control diet compared to diet enriched with sucram in pig gut ( high in diet sucram compared to standard feed in sus scrofa pig gastrointestinal system united kingdom )2017-11-26v41 / 227approvedNo
256amnoncommon sus scrofa, pig, duodenum, jejunum, ileum, united kingdom2017-11-26v41 / 380approvedNo
256amnonhigher in small intestine compared to colon in pigs ( high in duodenum jejunum ileum compared to caecum right colon left colon in sus scrofa pig united kingdom )2017-11-26v41 / 387approvedNo
256amnoncommon sus scrofa, pig, caecum, right colon, left colon, united kingdom2017-11-26v41 / 490approvedNo
256amnonlower in small intestine compared to colon in pigs ( high in caecum right colon left colon compared to duodenum jejunum ileum in sus scrofa pig united kingdom )2017-11-26v41 / 740approvedNo

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