Experiment ID: 2546

Field Description
namemechanical biofilm disruption causes microbial and immunological shifts in periodontitis patients (8105330) - gpt-5
proj_id8105330
sraprjna725103
date_of_upload17/03/2026 17:35
doi10.1038/s41598-021-89002-z
modelgpt-5
sample_groups_version18
dbbact_id998
dbbact_linkhttps://dbbact.org/exp_info/998
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
gingiva0.666667
non-surgical periodontal therapy0.666667
glasgow0.500000
days 900.500000
human middle aged stage0.400000
LOWER IN days 900.285714
subgingival dental plaque0.181818
united kingdom0.117647
periodontitis0.117647
oral cavity0.095238
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN days 901.000000
gingiva0.500000
non-surgical periodontal therapy0.500000
days 900.500000
glasgow0.333333
human middle aged stage0.250000
subgingival dental plaque0.100000
united kingdom0.062500
periodontitis0.062500
oral cavity0.050000
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
glasgow1.000000
hospital outpatient1.000000
gingiva1.000000
oral cavity1.000000
non-surgical periodontal therapy1.000000
human middle aged stage1.000000
subgingival dental plaque1.000000
united kingdom1.000000
periodontitis1.000000
homo sapiens1.000000
baseline0.500000
days 900.500000
post-treatment0.500000
LOWER IN days 900.166667
LOWER IN post-treatment0.166667
LOWER IN baseline0.166667
Number of experiments associating the term to the sequence
TermScore
glasgow1.000000
hospital outpatient1.000000
gingiva1.000000
oral cavity1.000000
non-surgical periodontal therapy1.000000
human middle aged stage1.000000
subgingival dental plaque1.000000
united kingdom1.000000
baseline1.000000
periodontitis1.000000
homo sapiens1.000000
LOWER IN days 901.000000
LOWER IN post-treatment1.000000
days 901.000000
post-treatment1.000000
LOWER IN baseline1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2546gpt-5Effect of periodontal therapy: baseline vs day 90 subgingival plaque microbiome ( high in days 90 post-treatment compared to baseline in glasgow hospital outpatient gingiva oral cavity non-surgical periodontal therapy human middle aged stage subgingival dental plaque united kingdom periodontitis homo sapiens )2026-03-17v31 / 10pendingNo
2546gpt-5Day 90 subgingival plaque samples from periodontitis patients (post-treatment) (dominant glasgow, hospital outpatient, gingiva, days 90, oral cavity, post-treatment, non-surgical periodontal therapy, human middle aged stage, subgingival dental plaque, united kingdom, periodontitis, homo sapiens)2026-03-17v31 / 15pendingNo
2546gpt-5Baseline subgingival plaque samples from periodontitis patients (pre-treatment) (dominant glasgow, hospital outpatient, gingiva, oral cavity, non-surgical periodontal therapy, human middle aged stage, subgingival dental plaque, united kingdom, baseline, periodontitis, homo sapiens)2026-03-17v31 / 20pendingNo
2546gpt-5Day 90 subgingival plaque samples from periodontitis patients (post-treatment) (common glasgow, hospital outpatient, gingiva, days 90, oral cavity, post-treatment, non-surgical periodontal therapy, human middle aged stage, subgingival dental plaque, united kingdom, periodontitis, homo sapiens)2026-03-17v31 / 54pendingNo
2546gpt-5Effect of periodontal therapy: baseline vs day 90 subgingival plaque microbiome ( high in baseline compared to days 90 post-treatment in glasgow hospital outpatient gingiva oral cavity non-surgical periodontal therapy human middle aged stage subgingival dental plaque united kingdom periodontitis homo sapiens )2026-03-17v31 / 86pendingNo
2546gpt-5Baseline subgingival plaque samples from periodontitis patients (pre-treatment) (common glasgow, hospital outpatient, gingiva, oral cavity, non-surgical periodontal therapy, human middle aged stage, subgingival dental plaque, united kingdom, baseline, periodontitis, homo sapiens)2026-03-17v31 / 95pendingNo

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